RNA id: AMCG00014874


Basic Information

Item Value
RNA id AMCG00014874
length 1485
RNA type mRNA
GC content 0.66
exon number 6
gene id AMCG00014874
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38047486 ~ 38052112 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CcttttcatcttcttcttcgactgttctctctctccggGTGTTTACCCCCTCTCCCAACCGCCACCCTGAAGTTTCTGGCTGTGCTCCTGGCCGCGGGAATGCTGGCGTTCCTCGGGGCCGTCATCTGCATCATCGCCAGCGTACACCCGGGCTCCGGTAGGGCAGCCTCGCAGACCCCCGTCGACAACGAGTCGCTGTCCCCGGCGACAGGAATGCAGCCTATCCCGCCAGGCTCCGTGGCTGAGGCGGGGTCGCTGGGAGCTCTCCATGGTTCTGGAACGGAAGAAGGAGGAGGTGGCGGCGGCAGGGGACTGGGGCTGGGtttggggctggggctggggatTGAGTCCCCGACTTTCAATGGGTTGAGCGGCGGGCAGCAGTTCAGCTTCAGCCGAATGGTCTGCACCCCGATCCCCGCCGGCGAGTGCAAGATGAAGCCGCCAGGCAAGACCAAGCTGCAGCAAGCGGACGATCCTTCACTGTACGCGGGCGAAGACTGGGGCTTCCTCCGCACAGCTGCCGAGGAGCTCCGGCAAACCGTGATGCAGCAGAAGCAGCAGATCCGCAGCGACCAGGACACCATCCGGGAGCTGACGGGCAAGCTATCGGAGTGCGAGAGTGGGCTGGAGGAGCGCAGCCTGCCCGCCGCTCTCTTGGGGAGCCGCCAGTACACAGAGCGCAGCATGTCCGGGGACGACGCACCGGCCTCGGCCGTTCAGCTGCACTCCGCCCGAGCCGTGGAGGAGTTGGAGCAGGCCATACACCAGCTCAAAGACCGTATCGAGAAACTGGAgGCTGACTCCCTGCAGTGGCGGGTGGAGGACCTGGAGGGGGAGTTGCGCAGGCGCATGGAACAGCTGGACAAGGAGAGGGCTGCCCTGCGCAAGGAGACGGGCCGGCAGCGCCTGGAGATTGACCAGGACATCAACAATCTGCATCACCGCATCGCGCAGCTGGagcaggGCCTGTCTGACTACAACTACCCTGAGGGCTACAAGCTACTGTTCCCCTCACGCACCAACTCCATGCATGCGGTGGTGCGCCAGGCCGTGCCTGAGCTCTACAGCATGACCGCCTGCCTGTGGCTGCGCCCGCGGGGGGGAGACGTAGGGACCCCCTTCTCCTACTCGGTCCCGGGGCAGCCCAACGAGCTGGTGCTGCTGCAGGGGCCCCACAGTCCAGTGGCGCAGTTGCCCCTGCAGCTGTCGGGGGACGTGTGGCAGCACGTGTGTGTCAGCTGGACCTTGAGGGACGGGGCCTGGATGGGCAACTGCGGGGTCAGGGCCTTGGTGGGGGAGTTGGCGCAGTTCAACATGTGGGACCGGCTGCTGTCCCCCTCGGAGGTGGGGGGGCTGGCATCCTGTTCGCACAGCCTGGCAGGCAGCGTGGTGTCCTGGAGTGACCGGCACATTGACGTGTTTGGGGGGGCCAGCAAGGAGCCACTGGAGCCATGCCAGGAGCGCCGCCGGGGGGAGGGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92314 lncRNA downstream 203143 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 220784 37826479 ~ 37826702 (-) True G73918
TU92297 lncRNA downstream 263911 37779333 ~ 37783575 (-) False G73916
TU92291 lncRNA downstream 343438 37703846 ~ 37704048 (-) True G73911
TU92288 lncRNA downstream 363944 37683239 ~ 37683542 (-) True G73908
TU92368 lncRNA upstream 11235 38063347 ~ 38071617 (-) True G73980
TU92433 lncRNA upstream 125862 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA upstream 127935 38180047 ~ 38180598 (-) False G74030
TU92461 lncRNA upstream 229325 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 256973 38309085 ~ 38340216 (-) True G74093
AMCG00014875 mRNA downstream 7435 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014871 mRNA downstream 93174 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014866 mRNA downstream 159523 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014865 mRNA downstream 183003 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014860 mRNA downstream 431124 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014878 mRNA upstream 73931 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014879 mRNA upstream 89795 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014883 mRNA upstream 209418 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014885 mRNA upstream 250940 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014886 mRNA upstream 278019 38330131 ~ 38339363 (-) True AMCG00014886
TU92296 other downstream 263911 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 722179 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1653993 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1793299 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1865135 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 291210 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 360048 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 380151 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 438211 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 545256 38597368 ~ 38644538 (-) False G74160

Expression Profile