RNA id: AMCG00014879


Basic Information

Item Value
RNA id AMCG00014879
length 2300
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00014879
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38141907 ~ 38160087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCAAGATGGCACTGCTGCCAGTGTTGAAGCTGCCCAGGACCTGTCAGCACACAGTGAGAAGGATCCGGGGGAAGGTGCTCCTAATTGCATCCTTTCGTGGCTGCTACGTGTGGAAATTGGAGAAGGATGGCAGGCTGTATGCTGCCCTGACTATACGCTACTATGACCTTATCCTGAAGATGACCCAGGTGGCCACTGTGTCCTGCCCACTGAAAACAACCCAGCCACAGCTACCCAAGGGGCTGTCCATCTCATGCAGTGAAGTCTGCATGACTGTACACCTGCCCACTGGGCCCCTGTCTGCTGTCCAGATCCTGGACTCCTCCAAAGCACTGGTCCCAGTGCTGCAGATGCCCAAGTCCTGTGGCTACTCCCTGGTCAGGGGCCAGGGCAAGAATGTACTGACCATCCCCTACACTGCCTGTGACATCtgCTTTCAGGAGCAGCGGTACACAATCCAGGTGGTGTACATGACTGCAGCAGGGGAGAGAGCAGAGATCCAGGTGTCCTGCCCCTACCGCAAACTACAGCCCCGGCAGGGTTGCCACATTCCCAAGAGCCAGCAAGTCTCCTGTGGGCCCAAAAGTGTTCGTGCGACAGCGTGTTTGGCCATTGGCTGCTGTGTGGACCCTGAGACTGCGCACTGCTACTACCCTCTGGAGGAATGTACATCTGACAAGCAGTTTGTCTTTGCTGTCCACCGTACCCTTACTGCCCCCCCTGTGGACCCATCCTCTCTGGCCATTGCTGGCAACAAGTCCTGCACCCCTGTCATCTGCACCCCTGATTTTGCGGTCTTCAAGTTCCCAGTGACTGGCTGTGGGACCCATGCCTTTGTGGTGGGCGAGACCACTATCTACTTGGCAGAGGTGATGGCCATGGCACGACGCAACCATCTGAACTATGGTGTGATCACCAGAGACAGCCCTTTCAGGTTGCTGGTTGAGTGTCGCTATGCAGAGGATAACCTGGTCAGCACTGGCTACCTGGTAAAGAGCCCCTACCTACCCAGCACTATCCTGTCCCCTGGGGTGTTTGGGGTGCAACTCAGAATTGCTACTGATGACAGCTACAGCCGCTTCTACCCTCAATACCACAGACCTCTGTGGCTGCTCCTGGGCCACCCTGTGTATCTGGAAGTGCGGTTGCTTAGCTCGCCAGACCCtaacctgctgctgctggtgcacTACTGTGTCGCCTACCCCCGCTCTGCCCGTGCTGTCTGGGTGCTGCTGTATGAAGGCTGCCCTAACCCCCTGGACTATGGCCATACCTCGACCCTGCATGTCAACAACCAGCTGCCCCTGCCCAGACAGCACCGCCGCTTCCACATCACCACCTTCCAATTCATGGATCGCACGGTGCAGGCGTACCTGGATGAGGAGATCTACTTCATGTGCTCCACTGAGGTGTGCTCTCCGACCATGAAGACCTGTGTGGAGGGCTGCTTTGATGGGCGCAGTGAGTTGGCCTTAACATGCAGTTCCCGTTGACTGGCTGTGGGACCCATGCCTTTGTGGTGGGCAAGACCACCATCTACCTGGCGGAGGTGACAGCCCTGGCACAACACAACAGCCTGAACTATGGCGTAATCACCAGAGACAACCATTTCAGGTTGCTGATTGAGTGTCAGTATGCAGAGGATAACGTGATGAGCACTGGCTACCTGGTAAAGAGCCCCAACCTACCCAGCATTATCCTGTCCCCTGGGGTGTTTGGGGTGCAGCTCAGAATTGCTACTGATTATACCTACAGCCGCTTTTACCCTCAGTATCACAGACCTCTGTGGCTGCTCCTGGGCCACCCCATGTATCTGGAGGTGAGGTTGCTAAGCTCGCCAGACCCCAACTTTCTGCTGCTGGTGCACTACTGTGTCGCCTACCCCCACTCTGCCCgtgctgtctgtgtgctgctggTTGAAGGCTGCCCCAACCCCCTGGACTACGGCCATATCTCCACCCTCCATGTGAACAACCAGCTGCCCCTGCCCAGACAGCACTGCCGCTACCACATCACCACCAGTTCATGGATCACTCGGTGCATGCATACCTGGATGAGGAGATGTACTTCATGTGCTCAACTGAGGTGTGCTCTCCAGCCATGAAGACCTGTGTGGAGGGCTGCTTCGAAGGCCGCAagaTCCCAGTAGTACCAGACCCCAACATAGATGCCTGTTGTCTCCGGAAGCCCTGTCCAGGAGgGCTGTGCTGGACCCTGTGGGTGTTCCTGCTCTCCACCCTCCTGCAGGCTTTGTGCTGCTGTCTCTGTAATGGCTGGCACCTGCTGTTGGCTGACTGA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92368 lncRNA downstream 70290 38063347 ~ 38071617 (-) True G73980
TU92314 lncRNA downstream 297564 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 315205 37826479 ~ 37826702 (-) True G73918
TU92297 lncRNA downstream 358332 37779333 ~ 37783575 (-) False G73916
TU92291 lncRNA downstream 437859 37703846 ~ 37704048 (-) True G73911
TU92433 lncRNA upstream 17887 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA upstream 19960 38180047 ~ 38180598 (-) False G74030
TU92461 lncRNA upstream 121350 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 148998 38309085 ~ 38340216 (-) True G74093
TU92501 lncRNA upstream 183235 38343322 ~ 38350291 (-) True G74087
AMCG00014878 mRNA downstream 13162 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014874 mRNA downstream 89795 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014875 mRNA downstream 101856 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014871 mRNA downstream 187595 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014866 mRNA downstream 253944 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014883 mRNA upstream 101443 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014885 mRNA upstream 142965 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014886 mRNA upstream 170044 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014888 mRNA upstream 203815 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 255315 38415402 ~ 38423841 (-) True AMCG00014889
TU92296 other downstream 358332 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 816600 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1748414 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1887720 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1959556 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 183235 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 252073 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 272176 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 330236 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 437281 38597368 ~ 38644538 (-) False G74160

Expression Profile