RNA id: AMCG00014881


Basic Information

Item Value
RNA id AMCG00014881
length 1503
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00014881
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38234697 ~ 38244140 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGCAGTGTGGTGGCGTACTTCTCCCTGGTGCTGTCAGTACCGGAGAGCCTCCAGGATAGGGTGACGGATAGCAGGGTGAACGACAGCCTGCACTGTAGCTTGAGTGCAAAGGGCAATGGGGGCAGCGTGGCAAACCTGGGTGGGCACCTGCTGCTCATCGACTCCCTCTTCATCACCGCCTGCCTGTGGCTGCTGCAGGCCCTCCCCGGGCAGCGCGTGGAGCTGCGGTTGCAGTGGGTCCTGCCTGAGTGCCGCGACCGGCTGCTCATCTACGACTCCGGCACTCCCTCCCACACCAGCTTCCTCACCTCGCTGTGTGGCAACCGCATTCTACAGCCTTATGCAGAGAGAATCAACCTGTTGTCTCCCTCAACAACCATATCCATGACTTCGCAGGTATCCCTCACAGGGCCAGGAGTGAAGGTGCTCTACAGCCTCTACAACAAATCAGACCTGTGCTCGGCTCAGTACCAGTGTCCCGAGGACAGCCGTTGTGTGGAATACTACAAGTTGTGCGATGAGCATCCCGACTGCCTAGAGGGCCTGGATGAGGTGAACTGCACCGAGGGTGTGCAGTGCAGCACCACCACCTACCTGTGCGCGGACGGCACCTGCCTGAAGAAGCCCAACCCTGAGTGCGACTTTGTGTCCGACTGCCCGGACCTGTCCGACGAGAAGCGCTGTGACTGTGGGCTGCAGCATCTCTCCAGCCGTGTGGTGGGTGGGGTCAACTCCTCAGAGGGGGAGTGGCCATGGCAGGCTAGTCTCCGGGTCAAAGGGCGCCACCTGTGTGGGGGAACGTTGATCTCCAACCAGTGGGTTGTCTCCGCGGCACACTGTTTCCAGGATGACAGTCTGTCCTCCCCATCCCAGTGGACAGTGTACCTGGGGTCGGTGTCTCTGAGCCAGGGGGGCCCAGGCCAGGCCTCCTATGCAGTGCAGGAGATCCGGACGCACCGTTACTATGACGACGAGACCCACGACTACGACCTGGCGCTGCTCAGGCTGGACCGGGCTGTGGCCCCCCCCACTGCCGCCCGGCCCGCCTGCCTGCCACCCCCTTCTCACCACCTGGAGCCCGGCTTGCTTTGCTGGGTCACCGGCTGGGGAGCTCAGAAGGAAGGAGGTTCCTCTGAGGCAAACCTTACCCCATGGTGCTGTGTTAATTTGTCTAGATCTGAAAGTAGGGGATTGTCCTTGCCTAAGGCAGCCATAGATGCCCAATACAAAACTgagactgacagagacagaTGGTATAGGAAAGCACTGTACCATGCATTACTGTATTATTCTCCTAATTCATtccactttgtgtgtgtgtttgttctgtgtgtgtgtttgcagggcGACTCTGGGGGTCCTCTGGTTTGCAGGGAGCCCTCTGGCCGCTGGTTCCTGGCAGGGGTGGTGAGCTGGGGTGTGGGCTGCGGACGGCCCCACTACTACGGTGTCTACACCCGCATCACCAAGATGGTCGCCTGGATCCGAGAGATGGCCTTC

Function

GO: NA

KEGG:

id description
K09637 TMPRSS6; transmembrane protease serine 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92327 lncRNA upstream 301902 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 350009 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 413335 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 488510 37745983 ~ 37746187 (+) True G73914
TU92269 lncRNA upstream 525896 37708286 ~ 37708801 (+) True G73889
TU92477 lncRNA downstream 67336 38311476 ~ 38313617 (+) True G74067
TU92590 lncRNA downstream 404782 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 407257 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 467568 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 469525 38713665 ~ 38714115 (+) True G74195
AMCG00014882 mRNA upstream 6868 38220521 ~ 38227829 (+) True AMCG00014882
AMCG00014877 mRNA upstream 54241 38177874 ~ 38180456 (+) True AMCG00014877
AMCG00014876 mRNA upstream 58531 38169869 ~ 38176166 (+) True AMCG00014876
AMCG00014872 mRNA upstream 146662 38073684 ~ 38088035 (+) True AMCG00014872
AMCG00014873 mRNA upstream 207437 38023589 ~ 38027260 (+) True AMCG00014873
AMCG00014880 mRNA downstream 8822 38252962 ~ 38257417 (+) True AMCG00014880
AMCG00014884 mRNA downstream 107107 38351247 ~ 38359131 (+) True AMCG00014884
AMCG00014887 mRNA downstream 214229 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014890 mRNA downstream 309832 38553972 ~ 38572905 (+) True AMCG00014890
AMCG00014892 mRNA downstream 384981 38629121 ~ 38642517 (+) True AMCG00014892
TU92227 other upstream 716291 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2840048 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3274250 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3454107 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3995297 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 188234 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 566553 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 1092128 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1362747 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1620942 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile