RNA id: AMCG00014883


Basic Information

Item Value
RNA id AMCG00014883
length 1755
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00014883
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38261530 ~ 38263484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAATGCGGCGTCACCGAGTGTTCCTGCTGTGCACGGTGGGCCTGTGCGTCATCTCTTTCCTGCACTACTACAAGGCCCTGCACTATGTGTCCCTGCTGCGCGAGCTCTCTGCCCCCTACCCTAACATCCGCTCCTTCATCATGGTGTCCGGCTTCTTCTGGAAGGACGGGGGTGGGGCGGGTGGAGAGAGTGGGGCCAGCTTCCCCAGCGCCCACCCTGAGGGAGCCCCACCGCCCCCAGCCCCCCGCCGCGCCTCAGCCCCTCCGGGGGAGGTGCTGCCCCAACCCTGGGACAGGGATGAGCTCTGGACCCAGGATGATCACGCCCCCTCCCAACCCCACCCCAACTCTGCCCCACAGACCAGGCCCAGCGCTGACGCCACCGCCCCCAGCCACCCCCAGTCCCCCCGGCCCCGACCAGACCCCATGGGGCCTCTGGGTGACCTACACCGCCGCACCTTCCAGCTGCAGGAAGACGAGACGCCATACTTCGTGCGCACACGCGCCGGCGCCCTGTGCTTCCGAGAGGGCACAGAGATGGCCCCACCCCGAGGGGGGGCGGGTGGGACCGGGGAGGCTGGGGAGGGGGCAGTGCTGGGGGTGCGGAAGATCCTGCAGGAGGAGGGTAGTCGTGCAGGTGGTGGGGTGGCAGGCACAAGGCCACGTGGTCGAGGCCGGCGACTAGTAAAGTGTGTCTGCCGCCCCGGCTGGCATGGGCCCTACTGTGGGGTACCCACCATGGTGCAGCACTCCAACCTGCCCACGAAGGAGCGTCTGGCGCCCCGCGAACGGCCCCGGCGTGTGCTGAACGCCATCAACGTCAACCACGAGTTCGACCTGCTGCACGTGCGCTTCCACGAGCTGGGCCCGGCTGTGGACCTGTTCCTGGTGTGCGAGTCCAACTTCACGGCCTACGGTGAGGCCCGGCCACTGCACTTCCTGCAAAAGCTTCTGGATGGCACCTTTGACTATGTGCGCCATAAGATCCTCTATGTCTTCCTGGACCACTTTCCTGATGGCGGCCGGCAGGACGGCTGGATTGCCGATGACTACCTGCGCACCTACCTGACTCGGGACGGGCTGGCACGGGTGGGCGGGGCACGGCCAGACGACGTCTTCATCATCAACGATGCCGACGAGATCCCAGCCCGCGAGGGGGTGCTGTTTCTCAAGCTCTTCGACGGCTGGACCGAGCCCTTTGCCATCCACATGCGAAAGTCCCTGTACGGCTTCTTCTGGAAGCAGCTGGGCTCGCTGGAGGTGGTGGCGGGCTGCACGTTGGGCATGCTGCGTGCCGTGTATGACAGCGATGGCATCAAGCTGCGCAGGCGCGAGTACTACACCCTGCCGGGATTTCGCCGGTACGAGAACATCACTGGCCATATCCTGGTGCAGTGGTCCCTGGGCAGCCCCTTCCATTTCGCCGGCTGGCACTGCTCCTGGTGCTTCACCCCCGAGGGCATCCACTTCAAGCTGGTATCGGCACAGAACGGTGACTTCCCGCGCTGGGGCGACTATGAGGACAAGAGGGACCTGGGCTATATCCGGGAGCTCATCCGCACAGGGGGCTGGTTCGACGGCTCAGTACAGGAGTACCCCCCCTCCGACCCCCGTGAGCACATGTACGCCCCCCAGTACCTGCTGGACAACTATGAGCGCTACCGCTACATGCTGGAGAACCCCTACGCCAAGCCGGGAGACCGGGGTTGGAATGGCGGCCGGGGGGGGGCAGGTGGTGGTGGGGCAGGttag

Function

GO: NA

KEGG:

id description
K00737 MGAT3; beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92433 lncRNA downstream 80932 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA downstream 80932 38180047 ~ 38180598 (-) False G74030
TU92368 lncRNA downstream 189913 38063347 ~ 38071617 (-) True G73980
TU92314 lncRNA downstream 417187 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 434828 37826479 ~ 37826702 (-) True G73918
TU92461 lncRNA upstream 17953 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 45601 38309085 ~ 38340216 (-) True G74093
TU92501 lncRNA upstream 79838 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA upstream 79838 38343322 ~ 38350291 (-) False G74087
TU92556 lncRNA upstream 224778 38488262 ~ 38488479 (-) True G74128
AMCG00014879 mRNA downstream 101443 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 132785 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014874 mRNA downstream 209418 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014875 mRNA downstream 221479 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014871 mRNA downstream 307218 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014885 mRNA upstream 39568 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014886 mRNA upstream 66647 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014888 mRNA upstream 100418 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014889 mRNA upstream 151918 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 225135 38488619 ~ 38492954 (-) True AMCG00014891
TU92296 other downstream 477955 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 936223 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1868037 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2007343 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 2079179 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 79838 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 148676 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 168779 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 226839 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 333884 38597368 ~ 38644538 (-) False G74160

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062201 True 1770 mRNA 0.56 2 NC_007117.7 202367 ~ 205291 (+)