RNA id: AMCG00014884


Basic Information

Item Value
RNA id AMCG00014884
length 3407
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00014884
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38351247 ~ 38359131 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAATTCAAAATGGCGGGTTTAGACGGGTTGACCCATACGGGGAATCGCTGTAGAGGTTGCTAGGAAACCAGGCGTGTATAGGTTGCCAGGTTGGTCGGCAAGAATAACGTATCggctttgtatttcatttttacatgacaaaaatatccaaaacaaGGGAACTCATTGAACATTTACGAGAAAACGGACATACGGATACACCGAATCCATCCCGCGACGACTTTACGGGCGTTAGTTACCCGTGCCGTACACTGTCATGGTGAAGTTACGGGCTAAGTGTATATTGGCAGGAAACGCAGCTGTGGGAAAGACTGCTCTGGTCCAGATGTTCCTCAGTGATGGAGCTCACTTCCAGAAGAACTACAGCATGtCGGCAGGGGTGGAGGTGGTGGTGAAGACTGTGAGCATTCCAGACTCCAGCGACAGTGTGGAGCTGTTCATCTTTGACTCAGCTGGGAGAGAAGTCTTTTTGGAATCCTGTGAGAAACTGGTAGAGGCAGGGGTGGCCAGAGACTGGGCCCAGAGCCAGGGGCTGGAGTACTTCGAGACCTCTGCTAAGGAGATGCAGAGTTTTGAGCTGCCCTTTCTCGGCCTGGCTCAGACCTTTCACCGGGTCTATCAGGACAGAGTGCAGGCTTTGCGCACCCTGGCATAGGATCCCCATCCCCTGGGACCACCACACTGGGCCCCAGCCTTGGCCCTCGAGTCTGTGTCCTCATCAGCCCAGTGTGGACTGCAGGCTCACCTGGTTTGGTATCACAGGCACTGGAGCCACTGGACTGCCTTCTGACCCAgcacactttatatatatatatatatatatatatatatatatatatgttatttttgtttcatatgcATTGCCTATAAATCATATGCTTTGGCTACACCGAAGAGAGAGGTCAcgccaataaagcttgttttgaattaaattgaattgagagagagagagagtgccgGGGAGCGGGGATTGTGGAGGGAGAGATACTGTGAGGCGGTCACAGGATGGCCACCCTCCTCCCCAGCAACTCTCCCTCAACTCAAGTCAAGGAAGAGCGCACACTGCACTTATAGAACGCACATGCATTGTGAAACTGTGCTAATGATGTGTGCTTCTTGTGTTGTATTTCAAATGGGATGTATTTGACATGTATTTCAGCCTTTCCTCCGTATATCTAAGAGAGGTTGATTTCCACAGGACCTTTACAAcatgtacaataaatatatggagGACAGACAAAAATAGATTTCAAATACTTGATTACAGTGCATCAGAGCCCACCATTAGAGATAGTGTGATGCTGCCATTGTGCTGTAGTGTGAGAAAGAGACAGTTTAATccccagacagacagcagaggCCTCAGCCCTAGTCCTCCCCACTGCTGTGACTGTTCTCCCTGTGAGACTTTGTGCTGAGCTGAGGTCGGTGGTACAGGTGTGCAGTGCAGCAGCTGAGCAGACAGATCAGGGGGACagtgctgtgtgctgctgtggtCGCCATCTTGCTGGAAATTGGAGGTTACTGGAGGAAGTTGAGAAAGCCAGGACTACTGACAGCACTACAGCACCCACAGTCCCAGCAGAGTTCAGCACAGGAATTGTGCCAGAGGACCTACACCCTGCTGCTCGCAGCCCTCCGAAAGACAGACTCCGTCCAGCAGACCCTACCTGTGcgactgtgtctgtctgtgtatgcatgcatgtttgTCTGTCATTTCAAATTCTAGACAAGCTTTATTAGCATGACGAGTCTACCCAAGTCTTGCCAAAACATTTAGATTGAGTGTCTGTGCAGATGTTGCTCTGTGtacgtctctctgtgtgtcttctgcttctctgtgtgttcctctgtgtctCTGGCTGTCCCTCTAcgtctctgtgtgtcactggGCGTCCCTctgcatctctctgtgtctctgggcATCCCTCTGCTTCTCTGCCTGTTTTTCAGGCAGCTAGGTGAACAGTGCGTCGCCGGCAGTATTAGTATTCTGTTCCTGCCTCTAGTGTCACACTGCATCGACTGCAGAGGACCAGTGGTCTGGGGGTGCAGTGCCAGGGAGCACCACCAGAGGGAGTAAGAGTGCAGTGGATCTCCCTGATAGGTGAGGAGAAGAGAGGTGAAGAGAGCAGTGGAGTGGAGGCTGCAGTCATCCTCTCCACTGCAGGGAGCCAGATGAAGACCCACTACGCTGACAAACTGAagctgacacacatacacacattcatactacacacttacacacaccaTCTCCACACCCCTGCCTTTCACACTCTCTTTCTCAAACTCTCCATCCCTGTGCTGGTgtgtgcagcagcagcaattCTTCCTCTCCAGCAGGTGGTGCTGCTCTGTGCTGACCTCCACGCTATaactcttcttcttcctccccctctccccctctggCTCTTCTGCCAGCAGCACAGTGATCACACAGCtttacactacacacactggcCTTTGATCAGCTCCCTGGGACACaacacagcgagagagagaggcaccGAGGGAGAGtcacacagactgacagagagagagagaggtaactGGGTCTCTCTCCAGACGAGTAGTTGTCTACCCTGAACCTAGGGGCACTGCTGGTCTattttattagttaaattaactaaaactcTGCCTTGATTTACTTTTGTGGACAAACGCTAAAGTCTCCTCTTTTGTCTACacccctctcgctctctcaaattgaaatttaaaaagctttattggcatggccAAAGATAGTATGGCCAAAGCAATAATGACAATTATCAAGAACTATAAACATGAATAAtgacaatcataataataataggaatgACAGGTGATATTAACAGTATTTACATACAATAATTCCATAGGAGGGATAAGGTTTAGTGAGCAGAATGATTCAGTTGCTGCTCATTGGTCATGCCCacctcctgcctcctgcctccttCAGAGTAAGGCGATGTCAACAGATTGACTTTGATATCAGAACTAGAGGCACACGCCCACATTTCATTTGCTGAGCAGGCCGTATATGCGTGCAGTTATTCAGAACTCCGAATACCAGAGGGATGTTAGGGGCCGGTGGAGAATTCGGTCTGTCAGGTGGTGCGAGGGCCCTGCCAGCTTTTATGCctgaattgttgttttttccagaatTTTTCAATAAAGAGgttaaaaggttaaaaggtcaaaagtctccctctctcagctgCCAGAGAGTTCCCAGGAGGGAGGCAAGGTGGCAGTGGTgggttgggggagggggcagtCTCTCACTCCTGTATGTGCACTGTGCCTGTGTACCTGTTCAGAgtgggacagacagagagagaaagagggatggagagagagattcagtgaccacagcctggccattaggtgtgtttacactgccatttctgatcctgatcaat

Function

GO:

id name namespace
GO:0048856 anatomical structure development biological_process

KEGG:

id description
K07934 IFT27, RAYL, RABL4; intraflagellar transport protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92477 lncRNA upstream 37630 38311476 ~ 38313617 (+) True G74067
TU92327 lncRNA upstream 418452 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 466559 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 529885 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 605060 37745983 ~ 37746187 (+) True G73914
TU92590 lncRNA downstream 289791 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 292266 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 352577 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 354534 38713665 ~ 38714115 (+) True G74195
TU92644 lncRNA downstream 373587 38732718 ~ 38751366 (+) True G74202
AMCG00014880 mRNA upstream 93830 38252962 ~ 38257417 (+) True AMCG00014880
AMCG00014881 mRNA upstream 107107 38234697 ~ 38244140 (+) True AMCG00014881
AMCG00014882 mRNA upstream 123418 38220521 ~ 38227829 (+) True AMCG00014882
AMCG00014877 mRNA upstream 170791 38177874 ~ 38180456 (+) True AMCG00014877
AMCG00014876 mRNA upstream 175081 38169869 ~ 38176166 (+) True AMCG00014876
AMCG00014887 mRNA downstream 99238 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014890 mRNA downstream 194841 38553972 ~ 38572905 (+) True AMCG00014890
AMCG00014892 mRNA downstream 269990 38629121 ~ 38642517 (+) True AMCG00014892
AMCG00014893 mRNA downstream 283923 38643054 ~ 38646942 (+) True AMCG00014893
AMCG00014896 mRNA downstream 424264 38783395 ~ 38784172 (+) True AMCG00014896
TU92227 other upstream 832841 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 2956598 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3390800 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3570657 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 4111847 34238934 ~ 34239400 (+) True G73292
TU92541 other downstream 73243 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 451562 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 977137 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1247756 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1505951 39865082 ~ 39872003 (+) False AMCG00014923

Expression Profile