RNA id: AMCG00014888


Basic Information

Item Value
RNA id AMCG00014888
length 972
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00014888
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38363902 ~ 38402794 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCTCTTTGACCGCGGCGTCCAGATGCTACTGACCACGGTGGGCGCTTTCGCCGCCTTCAGCCTCATGACCATCGCGGTGGGCACGGACTACTGGCTGTACTCGCGGGGCGTCTGCAAGACCAAGTCCGTGAGCGAGAACGAGACCAGTAAGAAGAACGAGGAGGTCATGACTCACTCGGGGCTCTGGAGGACGTGTTGCTTAGAAGGGAATTTTAAAGGGCTGTGTAAACAGATCGACCACTTTCCAGAGGACACTGACTACGAGGCTGACACTGCAGAGTACTTCTTACgtgcAGTGCGAGCCTCCAGTATATTCCCCATCCTGAGTGTAATCCTCCTGTTCATGGGAGGCCTGTGTATCGCCGCCAGTGAGTTCTACAAGACCAGGCACAACATCATCCTCAGCGCGGGCATCTTCTTTGTGTCGGCagGCCTGAGCAACATCATCGGGATCATCGTGTACATATCAGCCAACGCGGGTGACCCGTCCAAGAGCGACTCGAAGAAGAACAGCTACTCGTATGGCTGGTCCTTCTACTTCGGCGCCCTGTCCTTCATCATCGCTGAGATGGTGGGCGTGCTGGCAGTGCACATGTTTATCGACCGGCACCGGCAGCTGCGAGCCGGGGCGCGCGCCACTGACTACCTGCAGAGCTCGGCCATCACCCGCATCCCCAGTTACCGGTACCGGTACCGGCGCCGTTCGCGGTCCAGCTCACGCTCCACCGAGCCCTCGCACTCGCGCGACACCTCGCCCGTGGGCCTGAAGGGCTTCAACACCCTGCCCTCCACCGAGATCTCCATGTACACCCTTACCAGGGACACACTCAAgtctgcccccacccccaccgccACCTACAACTCCGAGAGGGACCACAACTTCCTGCAGGTCCACAACTGCGTGCAAAAGGACCTCAAGGACTCGGCCCACACCAACACTGCCAACCGCCGCACCACGCccgtatga

Function

GO: NA

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92501 lncRNA downstream 13611 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA downstream 13611 38343322 ~ 38350291 (-) False G74087
TU92512 lncRNA downstream 23686 38309085 ~ 38340216 (-) True G74093
TU92461 lncRNA downstream 80385 38281437 ~ 38283517 (-) True G74052
TU92433 lncRNA downstream 183304 38177974 ~ 38180598 (-) True G74030
TU92556 lncRNA upstream 85468 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 103398 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 237371 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA upstream 237882 38640676 ~ 38644538 (-) True G74160
TU92608 lncRNA upstream 246128 38648922 ~ 38649290 (-) True G74167
AMCG00014886 mRNA downstream 24539 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014885 mRNA downstream 46885 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014883 mRNA downstream 100418 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 203815 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014878 mRNA downstream 235157 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014889 mRNA upstream 12608 38415402 ~ 38423841 (-) True AMCG00014889
AMCG00014891 mRNA upstream 85825 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 197627 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 273615 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014897 mRNA upstream 326195 38728989 ~ 38836352 (-) True AMCG00014897
TU92499 other downstream 13611 38343322 ~ 38350291 (-) False G74087
TU92296 other downstream 580327 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 1038595 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1970409 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 2109715 36253774 ~ 36254187 (-) True G73612
TU92533 other upstream 9366 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 29469 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 87529 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 194574 38597368 ~ 38644538 (-) False G74160
TU92703 other upstream 495301 38898095 ~ 38920353 (-) True G74247

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050151 True 2994 mRNA 0.45 4 NC_007114.7 29714775 ~ 29845175 (+)
grasscarp (Ctenopharyngodon idella) TU312597 True 1913 lncRNA 0.50 4 CI01000069 2065208 ~ 2155034 (-)