RNA id: AMCG00014889


Basic Information

Item Value
RNA id AMCG00014889
length 1192
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00014889
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38415402 ~ 38423841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGCTCTGAGGTGGAGATCCTGGACGACTATCTGTTTAAGTACAAGGGCTATGTCTTCATCAGAGACGAGGTACAGCCGGAATACATCGACTCACTGGAAAATTTCGAAATAAGGGACAGCACAGTGTGGACCCAGAATATTGTGACAATGCTGTACGAGTCTGAGCTGCCCCCCGCGCCCCCCACTTCTGACACCACCTTCCAGCGTATGCCTTGGCTGGAATACATCCAGAAGGACCAGGACATAATCAACCGCCCCTCCCCCCGCCTCTTTGCCTCGCACCTAGGGCACTACCTGATGCCCCAGGGGGTCAAAGACAAGCAGATCAAAGTAGACGTCCTGGTGTCCTATTACCACTTCGCCAAAATCATGGCCAAACTGGAGACGCCCAAAGACTTTGATGACATGTTGGACAGGTTTGAGGAGGGAAGAGTGATCTGTGGCTCCTGGTTCGATCACGTGTGCGGCTGGTACAATCACAGAGATGACTTCAACATCCTTTTCCTGACCTATGAGGAAATGATCAAGGTGGGCACTGTGGGCGACTGGAAGAACACCTTCACCGTGGCTCAGAGTGAGAGGTTCGACCAAATCTTTAGGGAGAAGATGAAGGGCCTGCCAGTGCAGTATAGCTGGGACATCAGCGAGATCAAGCAGGCCTGATCCCACCAGGAGTGCAGCactataatatatgtataatatgccAATACACTGACTTTCCCCCACACACTACTGCACCACACCACATCAGAATCTGATCGACACCAATATCCAATCAATTCCATTATATGACCAATATTGGAGATAGAGGAGAggggaagaaggaggaggagttttattgtattttctgtgcAATCCTGCTGTGGCATCTGTGCTCCTgttggtcatgccaataaagtaACCTTTGATTCTGAGTTTGAATttaagaggagaggagagaggggagagagggcggaggggaatgagagagagaactaATAACCCTGGATCACAGCCCTAGCCACCAGACTGTTCAGATCTGTCAAACATCATCATAAAGCACTGCTGATTTGCTGGCCCAGTcctcctgtgtgtctctgtctgtctgtctgtctgtctgtctgtctgtcggttTGCCTGTCTGGGTTCAAGATATGCTGGATCTGATTTCCATAACTGTGAATTGTGGCTGTGCTGTACGGTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92501 lncRNA downstream 65111 38343322 ~ 38350291 (-) True G74087
TU92504 lncRNA downstream 65111 38343322 ~ 38350291 (-) False G74087
TU92512 lncRNA downstream 75186 38309085 ~ 38340216 (-) True G74093
TU92461 lncRNA downstream 131885 38281437 ~ 38283517 (-) True G74052
TU92434 lncRNA downstream 234804 38180047 ~ 38180598 (-) False G74030
TU92556 lncRNA upstream 64421 38488262 ~ 38488479 (-) True G74128
TU92567 lncRNA upstream 82351 38506192 ~ 38575968 (-) True G74137
TU92594 lncRNA upstream 216324 38640165 ~ 38644538 (-) False G74160
TU92593 lncRNA upstream 216835 38640676 ~ 38644538 (-) True G74160
TU92608 lncRNA upstream 225081 38648922 ~ 38649290 (-) True G74167
AMCG00014888 mRNA downstream 12608 38363902 ~ 38402794 (-) True AMCG00014888
AMCG00014886 mRNA downstream 76039 38330131 ~ 38339363 (-) True AMCG00014886
AMCG00014885 mRNA downstream 98385 38303052 ~ 38317017 (-) True AMCG00014885
AMCG00014883 mRNA downstream 151918 38261530 ~ 38263484 (-) True AMCG00014883
AMCG00014879 mRNA downstream 255315 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014891 mRNA upstream 64778 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014894 mRNA upstream 176580 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014895 mRNA upstream 252568 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014897 mRNA upstream 305148 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014902 mRNA upstream 714982 39138823 ~ 39176661 (-) True AMCG00014902
TU92533 other downstream 2171 38412160 ~ 38413231 (-) True G74107
TU92499 other downstream 65111 38343322 ~ 38350291 (-) False G74087
TU92296 other downstream 631827 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 1090095 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 2021909 36373151 ~ 36393493 (-) True AMCG00014845
TU92542 other upstream 8422 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 66482 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 173527 38597368 ~ 38644538 (-) False G74160
TU92703 other upstream 474254 38898095 ~ 38920353 (-) True G74247
TU92854 other upstream 834221 39258062 ~ 39260360 (-) True G74375

Expression Profile