RNA id: AMCG00014893


Basic Information

Item Value
RNA id AMCG00014893
length 561
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00014893
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38643054 ~ 38646942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGCGGGACTGATGTGTTGACTCCGGGGCTGCGGACAGATGGacagcggcggcggcggcgccTCGGCCTGGGAGGCCGCGCCTCACTCACTGCACCTCGGGTTGTGAcggctgtgctgctgctggctCTGTCCCGCCGCTGCGCAGGCGATaATGTTGAGCAAAGGCAGACATTCAGGAAAGGAGAAACCATGACAATCAGAGGGTATATCCCTCTAGGTGCCTTCAGATTTGCCATTGAGATTGGGCACTCTGATGAAGACTTGGCACTGCACTTCAACCCTCGATTCTCAGGGAGTCACATTGTGCTCAACTCAAGGCAGAAGTGGAGCTGGGGTCAGGAACAGCGTGAGACCAACTTCCCCTTCCAGCCGGGGAAGGAGTTCAAGatgTCCATCACTCACAAGGGCTCATCCTTTGAGATCGAGCTGCCTGGCGGCAAAGTGATACATTTTCCCAATCGCCTTGGAGTTGACGCTTACAGCTATGTGACAACACAATTTGACATCCAGATCATTTCCATTAAAGTTTTCCTTGATTCTACAGGACAGATTTAG

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92477 lncRNA upstream 329437 38311476 ~ 38313617 (+) True G74067
TU92327 lncRNA upstream 710259 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 758366 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 821692 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 896867 37745983 ~ 37746187 (+) True G73914
TU92590 lncRNA downstream 1980 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 4455 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 64766 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 66723 38713665 ~ 38714115 (+) True G74195
TU92644 lncRNA downstream 85776 38732718 ~ 38751366 (+) True G74202
AMCG00014892 mRNA upstream 537 38629121 ~ 38642517 (+) True AMCG00014892
AMCG00014890 mRNA upstream 70149 38553972 ~ 38572905 (+) True AMCG00014890
AMCG00014887 mRNA upstream 176827 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014884 mRNA upstream 283923 38351247 ~ 38359131 (+) True AMCG00014884
AMCG00014880 mRNA upstream 385637 38252962 ~ 38257417 (+) True AMCG00014880
AMCG00014896 mRNA downstream 136453 38783395 ~ 38784172 (+) True AMCG00014896
AMCG00014898 mRNA downstream 315011 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014899 mRNA downstream 580985 39227927 ~ 39233005 (+) True AMCG00014899
AMCG00014900 mRNA downstream 590682 39237624 ~ 39260277 (+) True AMCG00014900
AMCG00014904 mRNA downstream 734159 39381101 ~ 39389687 (+) True AMCG00014904
TU92541 other upstream 210193 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 1124648 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 3248405 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3682607 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3862464 34780122 ~ 34780590 (+) True G73329
TU92678 other downstream 163751 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 689326 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 959945 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1218140 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 1218678 39865620 ~ 39872003 (+) False AMCG00014923

Expression Profile