RNA id: AMCG00014901


Basic Information

Item Value
RNA id AMCG00014901
length 4729
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00014901
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39205047 ~ 39217098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGATGTAGAAAGTCTCTATAGAAAACGTCCTTCATATGCGTCACAGATAGCCGAGTGCCGCATGCTTTGCTATGCTTTGCTATGCGGAGATGATCCTGTGGCTCTGGTGCTGGGCTCAGTCGGCAGCCGCAGAAACGCATTCATTGACTGCTCTCAGGATGGGGACCACAGACGGCACCGAGCTCCCCGAGCACATAGCCATGTGGATGGTGGATGATGTGAGGTACTCCTACTATAACAGCACGGTGGGGAAACCGGTCCCCCTCTTCGACTGGTTCAATACCACAGAGGGGCGCGAGTTCTGGGATAGACGGTTTGAGCATATGATCGATGGCCATAAAATCTTCCAATGGAGTGTAAGAAAAATAGCCCAGGATTTCAACCATACAGGTGTTCACACTTACCAGTATGTTGGTCGCTGTGAGCTGGATGACGATGGGACCAAGCGGGTAAAAGTGTACCATGCATGTGATGGGAAGGACTTTATTAGTCTCGATGTCCACACCATGAGCTGGGTCGCTGTTGTGCCGCAGGCTGTCGTCTACAAACGCAAGAGAGAGGCAGACCCAGCCAGCCAACAAATTATTTCTCGTTACTATCGAAAGGACTGTTTTGATTTTCTGAAGACATTTCTCAAGTTTGGGAAGGAGACCCTGCAGAGGAAAGTCCGTCCTGAAGTGAGTGTGATTGACAGGAAGGATTCTCGCTCTGCGGGAGTGGAGGTGCTCTGTCACGTAACCGGCTTCTACCCACGAACAGTAAATGCTTCCTGGGTGAGAGATGGGCAGGCGGTGCTGGAGGAGGGGCTGTGGAGAGGGGAGGTGCTCCCCAATGGGGACGGGACCTACCAGCTGAGAAAGACCCTGACAGTGAGCGCTGAGGAGCAGGAGAAACGCAGCTACTCCTGCCGGGTGGAGCACAGCAGCCTGGAGGAGCCGATGACTGTGAAGTGGGGTAAGACGCAGCGTTATGACGCCTCAtgcctgctgctgcagctgcagagATGCCGTCACTGTCCTCACTGCTCCCTGCTGCTGAGCTGCTGtctgctctgtgtttcagatCCACAGGCTGCTCAGCACACAGGGATTATTGCTGGTGTCCTGGCTGCTGCTCTGGGTTTGATCGCAGTCTTAATTGTCATCatctggaggaggagagcagtgatttcCTGCTGCTCTGCACCGACTTCCCAGGAGGACGAGCAGGACTCTGTGGCCTCTGTGCCCCTGTCCTCCACATCCGGGGAAGCTGAGGGGCAAGCTGAGGGGCAGGAGAGCATGCCTGGAGCTCCACCCTCACTGTGCTAGCTGGATGTATCCTTGGAACAGCAACTTGAATGGACTTATCATGAGATCTGCGGTGAGGTCATTCCAGGACTGGACATTtctatgttttgcttttgttggaGTAAGGGGTATTGCAAAGACTTATAAACTCTAAGACTGGAAAGAAGAACAAGAGAGTGTTGTTCTTTGCACTATTGCAAGATGCATGAGCAAAGGCATCAGAGTAATcctatatacagtggctctcaaaagtattcacccccccttagacttttccacatttcattgttttacaaattaaaaatgaaaatctgcaaatttgttctaaaataattacaattacaggaCATGCAGGAAGTGCTGGAGTGTGAGAGACATATTTCGGTAGCAGTGGAAGGGATGGTTTGGCTGCTGCCCCCGTTCAAAGGGGAGCATGGGGATCTGGGTCTTCGGGCCGTGGAATTTGTTTGCGGCCAACATCTTGCTGCACAATCGCCAGGAACTCCTTGTGTCCTCCTGGTGGTGGTCCCTGCTTGATGAGGAGAGAGCAAGTGAACTGTTGTAAGTGAACCATTGTGTGCTGGATGAGCGTGCGGCGGTCTGCGTTGGGTGTGTACTGCATAGCCAGCAGAGCCTGTCTGAAGAAGGCAGAATCTCCCCTCTGCTTACCTTTgtaggttttttatttttatgtgtgtgtatctgtcagCACTGGCCAGTAGGGATGGGGATCATAaatttttattgatattgataccaTTTTCAAGATAGCTTAACGATCCGAGTCTTTATCgatacttttctattatttggTGGAAAGACGAGACAATGATAAATTCTTAACAGAactgttattgctattattgcAAAAACTTTGAgtctttaatttcagatttcaacATAACATATAACTATGAgaacagtaaattaatatatcAGTAGCAAAATGTCCaacacattttttccaacaacaaataaataatatacataaatacaataaatattatgctttacacaacaaaaagaaaaacgaatcGACAGCTCTTCTTGACAGCTCTTCACACTGTGCTCGTCAATCACGTATCTAATTTTAGGGGCATATGCGAGTGATGCCTGCAAGAAATTACCAGCAAACATAAATGATATGTTGCTTCCTCCTTATCTttggctttattaaaatgtagctaAGCCTTTGACCGCTTAGTACGTTCAGCCATCCTAGCAAGCaaagaaatgagaaatgaagGGAATTAGGGCGTGAAGCAATTCAATTCTTCTTCCTATAGTTTAAAGGCGGTTGGCAagcaattaaattcaatttagtAATTTTATTAGACAATCGATGTATGTTTGTGCAccagtgatttgatttaaatgacatGACTCTTGTCTCTCAAGACATAAGTTAATGTTACATGATATTACCCACTAGTCTCGATAGCAGTATCGATAAGCTCGGACCTTATTGATCTTCGGGTTTTGAAAAATTTGGAACCGGGTCCTTAATAGAACGGGGTCTTGATCCCCATCCCTACTGGCCAATGTGGGCAGGATACactgatgaagaagtaacaagtttaataaaaaaagtatttaaatacaggttaacccggaggcctcctctcacatgaagtgaaataaagaactaaggatgtgatttggagaagcctttttataTCTTCAGACAGACAATAGGTTGTGGtcttatctatcagaagtgattacatcttgttaaaatacagttgtacacaTAGgtttaccacatgcataataattaacacagacctgAGTTTTACCGATgtgttgattggtgctggtcagcattcttcagCCACAGATGTTATCAAAACTATATTAAGTCCTCAACAAAATACCTGAGCCCTAAAACACCAGAGATGTGGGGACTCAAGTCATGTGACTCTGGTGTTTCTATCGAGTCACAAATTTGCCAACTTGAGACTTGCTTAGCTGACTTAtctaatatattaaaaaaaggcttGACTTGACTTGGGATGGATGACTTGGCAAGTACTCTACGTTctaatgctttttaatgtatatatgttttttgccATTATGTATCTTTTACTGTTGTGACATAAATTGCCAAAACTAACAAtagcatattttattaatgtatttatttaaagccgCCAATATGATCCTTTATTAAAAGTTAGATTTAAACATTGGCATTGAGCACAGAAGTGAACCCCaagtttattagtttattaaagtatatttaggCACTGATCACAAGAGGAGGATGTTGCGTACAGTGCAGAAATTAGTGCTGAGTGCTacactaaacatttaaaatatattaatctagttaatagattttaataaatcatcaaaataaagaaatttcTCTGCCAAACCCAAAAATGTCATTCATGTTTGGTGGTTGAGAGATGCACAAATAGTTTTTCATGCTTTCCATGAAGTGTTTCTTGATTACATTAATTGACATGGAGATGAACTTCAGCAAATACTAACCTGCTGATGGATGAGCGGGAATCGCTGTCAGAGGGGATATTATATGGCTGGTCTATGGCTATAATATTTAGCACCCCCCTCTTCTCAAGAGTTCAAATAAATTGAGGTAGGTGCACCCTAAGGAGTGATCTATAACACAGTGTCTGGTCCCACCAGATCTACAATAAATGGGGtgtcacagtttattttaacccttGATAAGAAATATTATAACCGTTATAATATTTGTCAGAAATACTGTTTCTACGGCAGTAGACCAAGCCATCTGTtagcactgaaatgaaaatgaaatggagcTCGCTCGACTATTTGTTATTTGATCCCCTAAAAAAGGCCTAGAATCAGATGCTGAAGAGATTAGCACTACCTGTCTGTACTACTCTGATTTATATGAATCTACTTATTTATTAGATACAGCTGCTTGTTCACACTTCTTACAAAATCTAAATCTTTCCATATTAACCACTGAAGAAGCAAGAGATATGGGCAAACCTATTCTCTCTTTAGCGAATAATAGGTGCACTGCAATGTGTGAACAAAGACAAAGCACTGGCGTAGCCTTCAGAATTGTTGTTAGCAGTCTGGGATTTGTTAGGATGTCTTATGGAAATGcccatatgtatttttttttgtgtgtgtttgttttggagtCATGTGACCTCTTCTTGAACCAAAGTTATCAGCAAGGAGTTACCACTAGAATCACAAGTTTCACTACTTAATGATGACTGACTTTCATGCTGGATTAACAGCagcaaaaagaagaaagggTTCAAATACAGTTTTGCATAATAGTGATGGTCTGGGACAATTCCACAACTTGCTTGATTCTATAAAagcaatgattattattgtgtatttggaAAAGCACTgatcattcatattaaaaacaatggtGTGCATATTTAAGAAAGGCATATATTATTGGGGTTGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92771 lncRNA downstream 22413 39182366 ~ 39182634 (-) True G74307
TU92735 lncRNA downstream 162999 39002622 ~ 39042048 (-) True G74277
TU92693 lncRNA downstream 337121 38867561 ~ 38867926 (-) True G74239
TU92683 lncRNA downstream 367908 38836895 ~ 38837139 (-) True G74232
TU92675 lncRNA downstream 401162 38802916 ~ 38803885 (-) True G74224
TU92846 lncRNA upstream 15206 39232304 ~ 39238764 (-) True G74368
TU92855 lncRNA upstream 41432 39258530 ~ 39260360 (-) False G74375
TU92839 lncRNA upstream 76853 39293951 ~ 39295579 (-) False G74367
TU92844 lncRNA upstream 76853 39293951 ~ 39299385 (-) False G74367
TU92845 lncRNA upstream 76853 39293951 ~ 39299385 (-) True G74367
AMCG00014902 mRNA downstream 28386 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 368695 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014895 mRNA downstream 516986 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014894 mRNA downstream 575847 38600421 ~ 38629200 (-) True AMCG00014894
AMCG00014891 mRNA downstream 712093 38488619 ~ 38492954 (-) True AMCG00014891
AMCG00014903 mRNA upstream 46043 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014905 mRNA upstream 65056 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014906 mRNA upstream 161346 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 314228 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 373460 39590558 ~ 39591658 (-) True AMCG00014914
TU92703 other downstream 284694 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 560509 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 714107 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 772172 38432263 ~ 38432875 (-) True G74115
TU92533 other downstream 791816 38412160 ~ 38413231 (-) True G74107
TU92854 other upstream 40964 39258062 ~ 39260360 (-) True G74375
TU92969 other upstream 420801 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 684372 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 717795 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 727632 39944730 ~ 39951070 (-) True G74591

Expression Profile