RNA id: AMCG00014905


Basic Information

Item Value
RNA id AMCG00014905
length 828
RNA type mRNA
GC content 0.63
exon number 7
gene id AMCG00014905
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39282154 ~ 39285347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcAAGCCAGCCAGGAGTCTGCTGACCAGCACAAGAAACGCACAAGACTGGAGAAgGCCCACCCTGCATTGAAGGCGTTCATGTGCGGCTCTCTGAGCGGGACCTGCTCCACCCTGCTGTTCCAGCCCCTGGACCTGGTCAAGACTCGCCTGCAGACCTACAGCTCCCTGCAGCAGGGGTCCTCTCGCGTTGGCATGGTGGCCGTGTTCCTCAGTGTGGTCCGCACAGAGAAGCTGCTGGGGCTGTGGAAGGGCGTGTCTCCGtCTTGTGTGCGCTGTATCCCCGGCGTTGGGATCTACTTCAGCACCTTCTTCTCCCTGAAGCAGCACTTCTTCTCTGAGCGTGCTCCGTCCGCCCTGGAGGCGGTGCTGCTGGGGGCGGGGGCGCGGTCAGTCGCCGGGGTGTGCATGCTGCCCGTTACCGTGGTAAAGACGCGCTTTGAGAGCGGGCGGTACGGCTATGTCAGTGTCCTGGGGGCCCTGCGCACCATGTACCTGTCCGAGGGACCACGTTCGCTGTTCTCTGGCCTGACCGCCACGCTGCTCCGAGACGCCCCCTTCTCAGGCATCTACGTCATGTTCTACAGTCAGGCCAAGAAGGCCCTGCCCCCAGAGCTCACGAGCGCCCCCTGTGCTCCGCTGGCGAACTTTGGCTGCGGTGTGTTTGCAGGGGTGCTGGCTGCCGTGGCAACTCAGCCAGCCGACacTCAGGGTGTGCAGGGTTTTTTCCGTGGTGCAGTTCCTCGTGCCCTGAGGAGGACGCTGATGGCCGCCATGGCCTGGACAGTCTATGAGCAGCTGATGGCCAAGATGGGCCTGAAGTCCTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15118 SLC25A38; solute carrier family 25, member 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92855 lncRNA downstream 21794 39258530 ~ 39260360 (-) False G74375
TU92846 lncRNA downstream 43390 39232304 ~ 39238764 (-) True G74368
TU92771 lncRNA downstream 99520 39182366 ~ 39182634 (-) True G74307
TU92735 lncRNA downstream 240106 39002622 ~ 39042048 (-) True G74277
TU92693 lncRNA downstream 414228 38867561 ~ 38867926 (-) True G74239
TU92839 lncRNA upstream 8604 39293951 ~ 39295579 (-) False G74367
TU92844 lncRNA upstream 8604 39293951 ~ 39299385 (-) False G74367
TU92845 lncRNA upstream 8604 39293951 ~ 39299385 (-) True G74367
TU92843 lncRNA upstream 11645 39296992 ~ 39299385 (-) False G74367
TU92864 lncRNA upstream 16577 39301924 ~ 39302208 (-) True G74384
AMCG00014903 mRNA downstream 11910 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 65056 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 105493 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 445802 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014895 mRNA downstream 594093 38676409 ~ 38688061 (-) True AMCG00014895
AMCG00014906 mRNA upstream 93097 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014910 mRNA upstream 245979 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 305211 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 307267 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 355064 39640411 ~ 39641256 (-) True AMCG00014917
TU92854 other downstream 21794 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 361801 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 637616 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 791214 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 849279 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 352552 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 616123 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 649546 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 659383 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 699347 39984694 ~ 40012081 (-) False G74593

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000222_00091632_00097532.mRNA True 2561 mRNA 0.35 7 CI01000222 90064 ~ 97532 (-)