RNA id: TU92884


Basic Information

Item Value
RNA id TU92884
length 609
lncRNA type sense_over
GC content 0.55
exon number 4
gene id AMCG00014906
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39378175 ~ 39379153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtaatatgtgtactgtgtgtttgtgcagtgtgtaatgtgtgtgtgtgtgtgcagatccTGTCCAGAGTGAAGCCCGCAGTGGGGGCCGAGGCCCCGCCCAGTGAGAAGAAGAAGACGGGCAGGAGGCCCCCCCGGCTGGCAGAGTACCTGAGCCAGAGGGACTACCTGGGCGCCATCACCCTGCTGGAGttcCAGCGCAGCGTGGGCCCGGCGGAGGAGGACTCAGACCTGTGGCTGGGATACTGCGCCTTCCACCTGGGGGACTACAAGAGGGCCATGCAGgAGTACCGTGCCCTCTGTGTGCGGGAGGGCTGCCCCCCGGAGGTGTGGGTGAACCTGGGCTGCACGCTGTTCTTCCTGGGTCTGTACAGAGAGGCTGAGGAGGCGGCActgagagctcCTAAGAGTCAGCTGCAGAATCGCCTCCTGTTCCACTTGGCCCACAAGGTGagtttatctctctctctctctctctctctctctctcaattcaattcaattcaattcaattcaattcaagggtgctttattggcatgacaaacggattcgtagtgttgccaaagcagttgatattatatacatacattgaaaaataataaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92867 lncRNA downstream 63047 39314566 ~ 39315128 (-) True G74387
TU92866 lncRNA downstream 72205 39305708 ~ 39305970 (-) True G74386
TU92865 lncRNA downstream 74951 39303021 ~ 39303224 (-) True G74385
TU92864 lncRNA downstream 75967 39301924 ~ 39302208 (-) True G74384
TU92843 lncRNA downstream 78790 39296992 ~ 39299385 (-) False G74367
TU92894 lncRNA upstream 74500 39453653 ~ 39453963 (-) True G74413
TU92896 lncRNA upstream 83926 39463079 ~ 39477104 (-) True G74414
TU92912 lncRNA upstream 119550 39498703 ~ 39499677 (-) True G74427
TU92932 lncRNA upstream 191525 39570678 ~ 39571406 (-) True G74446
TU92952 lncRNA upstream 211343 39590496 ~ 39591405 (-) False AMCG00014914
AMCG00014905 mRNA downstream 92828 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 107931 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 161077 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 201514 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014897 mRNA downstream 541823 38728989 ~ 38836352 (-) True AMCG00014897
AMCG00014910 mRNA upstream 152173 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014914 mRNA upstream 211405 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 213461 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 261258 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 269651 39648804 ~ 39657562 (-) True AMCG00014916
TU92854 other downstream 117815 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 457822 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 733637 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 887235 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 945300 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 258746 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 522317 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 555740 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 565577 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 605541 39984694 ~ 40012081 (-) False G74593

Expression Profile