RNA id: AMCG00014907


Basic Information

Item Value
RNA id AMCG00014907
length 2469
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00014907
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39565733 ~ 39575588 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cataacaataacagtaagaGCAGCAGCCCgcgtccctccctctctcctccctgcctcCTCCCACCGCTCGGCGCCGCTGCTGGTACCCGATGGCGGAATAAAGATGGCGTCGATTCACTTCCACCCGTGGCCACTTGCCGGATCTTTGTAAAGccCCAGACTGAGCTCCTTGTGACgaggcagagagggggagggataGAGAGGGACCACAGATAAGTGCACAGTGTCTGGAGACCATGGCGTTCGAGGAGATTAAGAAAAAAGGAGTGATAgaGCTGTGTGTGGGTGAGGCGGGTGCGGAGGGCGTGGGGCTGGTCGCGGGCCGCAGCCAGCGGGAGAAGCGTCGCTCCTATAAGGACCtgctgagggaggaggaggagatcgCAGCGCAGGTGCGGAAAAGCTCCAAGAAACGTCCCAAGgacTCGGAGCTGTACCTGCTGGGCGGAGACTcgcacaagaagaagaagaaacttCTGAaccTCTCCTCCCCCGGCGCCCCACACCCCCCGAAGAAGAAGCGCAAGTCCTCGGACCCCCACCACGCCCCGTCCTCCTCGCCCCCCCCGCCGCGcctgcccccaccccaccccgccGACACGGCCATGGGGCTGCTGCAGGCCATCACGTCGCCGCTGGCCACTGGCTCCACGCCCTCCGGCCAGCACAAGAAGCCAGCCTACCCCACGCACTcgcactcccactcccactcccactcccactcccactcctcCAAGGAGCGGCGGCGCTCGGGCGAGGGGGGCCGCTCGCACTCGTCCTCCGCCCACCCGCACCACCGGCCCTCCTCCCTTGCTCCGCCCTCCTCCGCCAAGAAGCACAAGGCCCCGGCGCCGGACGAGCCGCCCCTCACGCTGCGGGAGCCGGAGGGGCTGAAGATGAAGCTCATCCTCTCCCCCAAGGAGAAGGGTACGGAGGCGGGGGGCAAGGGCGGCGTGGGGGATGGCTTCAGCTACCCCccgccctcctcctccaccgCCGCTCACctctcctcctcgtcctcctcctcgtcttcctcctcctcgtcctcctccgccgccgccgctgctgCCACcgccctctcgctctctcagggGAAGAAGGGCGCGGTGCGGCGCGGGCCGGGGGGTGCCGTGCTGCTGTCCAAGGCCCCCCGCAAGAAGAGCAGCACGCCCAGAGAGCCGCTCCCCGTGGtgggggaggaggtggaggtggaagggcgTCTGGCCCCAGGGCTGTGCGGGGCGGTGGGCCCTGGGGGTGACTCCTCCTCCTCGGGGGCGGAACTGGAGGCAGGGGAGCTGGTGATTGATGACTCGTACCGGGAggtgcagaagaagaagaagaagagtaAGAAGAGCAAGAAGAAGAAGGACAGGGAGCGGGAGCGCGACAGGGAGCGGGAGAAGGACCGGCACCGCGGGGACAAGAAGCACAGCAAGACCAGCAAAAAGAGCAGCAGCGGGGCGGCGGGGATGGGGCGGACAGgcactgTCCTCCTCTCCGGCGAGGTCACACAGGGACACACCCACTCCCACAGCTCCTCCAATCACGGCGTGGTGGTTGGGTCAGTGGGCGGGGTCTATGCCACGAGCCCGCCCCCCATTGTGCATCACCACGGCGGCAGCGAATCCCAGAacgagaagaagaagaagaaggaggagcgAGACAAGGAGAAGTCGGAGAAGGACAAGCCCAAGAAGAAGAACATGACCGCCTACCAGGTGTTCTGTAAAGAGTATCGGGTCAACATCAACGCGGAGCACCCCGGCCTggTGTTCGGGGAGCTGAGCAAGAAGCTGGCGGAGGTGTGGAAACAGCTGCCCGATAAAGACAAACTGgtatgGCGTCAGAAGGCACAGTATCTGCAGCACAAGCAGAATAAGGCCGAGGCCACCACTGTGAAGCGCAAGAGCTCCGTGTCCGAGGGGGGGTCCAAGAGCAAAGTAGGCTCAGTGCGGGGGCTGTCGTCTCCGAGCAGGAAGTCCCCGTCTGGAGGGGTGGGCGTGTCCCTGTCCCCCGCCCGGCCCCCCGAGGTCGACCCCATCGATGCTGCCGCCCACCTGCAGCTGCTGGGCGAGTCGCTGAGCCTGATTGGACACCGTCTGCAGGAAACCGAGggcatGGTAGCAGTGTCGGGGAGCCTGTCTGTGCTGCTGGACTCTATCCTGTGTGCTCTGGGTCCTCTGGCCTGCCTCACTGCACAGGTCCCTGAGCTCAATGCCTGCCCCCGACACGTCCTGtccaaCACTCTGGACAACATCGCCTACGTCATGCCGGGGCTGTGACCGCAAGGGCTGCTGGGAGATCACTCATCCAACGGGACGGGCAAGAAGTCGCCCCTTTCTTCACCAGGGGGCCAAAACATGGACTGTACCGTTTTCGGGACAGAGGTGTGGGGCGGGCTTAGATTAGGAGTAGTCCTCTTTCTGGGGGACGTAACCCAGAATCCACTATGGCCAGTGAGACGGG

Function

GO: NA

KEGG:

id description
K11298 HMG2L1; high mobility group protein 2-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92905 lncRNA upstream 66073 39498703 ~ 39499660 (+) True G74422
TU92830 lncRNA upstream 84026 39476816 ~ 39481707 (+) True G74363
TU92804 lncRNA upstream 259759 39305580 ~ 39305974 (+) True G74338
TU92799 lncRNA upstream 279929 39285294 ~ 39285804 (+) True G74333
TU92796 lncRNA upstream 285765 39279236 ~ 39279968 (+) True G74330
TU92928 lncRNA downstream 9334 39584922 ~ 39585159 (+) True G74442
TU92921 lncRNA downstream 11825 39587413 ~ 39588507 (+) True AMCG00014909
TU92947 lncRNA downstream 26264 39601852 ~ 39602098 (+) True G74459
TU92983 lncRNA downstream 72241 39647829 ~ 39659512 (+) True G74484
TU92997 lncRNA downstream 83945 39659533 ~ 39659958 (+) True G74491
AMCG00014908 mRNA upstream 35922 39511772 ~ 39529811 (+) True AMCG00014908
AMCG00014904 mRNA upstream 176046 39381101 ~ 39389687 (+) True AMCG00014904
AMCG00014900 mRNA upstream 305456 39237624 ~ 39260277 (+) True AMCG00014900
AMCG00014899 mRNA upstream 332728 39227927 ~ 39233005 (+) True AMCG00014899
AMCG00014898 mRNA upstream 597711 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014909 mRNA downstream 8450 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014913 mRNA downstream 43220 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014912 mRNA downstream 47838 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014911 mRNA downstream 55102 39630690 ~ 39636561 (+) True AMCG00014911
AMCG00014919 mRNA downstream 131473 39707061 ~ 39707433 (+) True AMCG00014919
TU92814 other upstream 89914 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 754605 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1132872 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2047327 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 4171084 35390634 ~ 35394649 (+) False AMCG00014836
TU92948 other downstream 31299 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 289494 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 290032 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 297552 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 375600 39951188 ~ 39953257 (+) False AMCG00014925

Expression Profile