RNA id: AMCG00014910


Basic Information

Item Value
RNA id AMCG00014910
length 2841
RNA type mRNA
GC content 0.68
exon number 3
gene id AMCG00014910
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39531326 ~ 39536843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtCGTTCATTAATTCAGACTCAGgtcaTGGCTCCTCCGAgctgcggctgctgctgctgggcacCATGAGCTCCGGCAAGAACTGCTCAGCCGCTACCCTGCTGGACCGCCCGGCCATCCAGGGCACCTGGGGGGAGGGGTCTGGGGCGGAGCAGCTGGGGCGGAGGCGGGGCCAGTGCCTACGAGGCATGACAGAGGGCCGGCGGCTGACGGTGGCAGTGGGGCCACGCTGGTTCTGGAGCGTGGGGCGGCTGGAGGAGGGCGTAGCGCGGGAGACAGAAAGGACTCTGCAGCTGTGCCACCCGGGCCCCCATGCCCTGCTGCTGGCGGTGCCCGTGGGCCAGTTCACACCTGTGGAGGCCCAAGCGGCGGCAGAGGTGCGGCGGCTGTTCGGGGAGGGGGCTCTGCTGCGGCACGGCCTGCTGCTGTTCACCTGTGGGGATTATCTGGGCGGACGCAGCGTGGATGACTATATCGCCCGTGAGGACCCTGGCCTACGGGAGCTGCTGGCACACTGCGGGGGGCGCTATGCCGTGCTCAACAACCGGCGGCCCCAGGAGCGGCTGCAGGTGCGGGGCCTGCTGGAGGCGGTGGAGGGGATGGTGGCGCGCAATGGAGGGGCCTGTCTGCATTGTGCCATGCccagggaggaagaggaggagtggcaggaggagaggaaggTCGTGGTTGTGGAGAGAGTGATGGAGGAGAGGAAGATGGGGGTAGTGGAGAcagtgagggagggagtggagggtttgagagagagggagatgcgGGCAGAGAtggaaatgagagagagggaggcgaGGGAAcggatggagggagaggagcGGGTGTTCAGGGACAGAgcgctggagagagagatgcgACCGAGCAGGGATTTGGAGGTGGAGAGGGTGAGGGCGGAGAATGAGCGGAAAGAGAGGGAGTTCCAGGAGCTGAGGGagcagaggaagagggagatgAGGGAGCTGATCGAGCGAGAGAGAgcaatggagagggagaggatgagGCTGGAGtcggagggagagatggagagggaggtAGACACCCGCAGACGTCAGTTCCAgctggaggaagagagggagaagcTGAaggagatgcagagagagagggagagtaaaGAGCGAGAGCTGGAGGAGCGTAGGTTCATGCAGGAGAGGGAGATGCAGATAGTGAGGGAGCGAGAGACAAggcagagggagacagagatggagagggaggcacagagggagagggacagaagacagagggaggcagagagagaggcgcAGGCCCAGAGGCAGAGGCTGGCAGAGAAAGAAGCTCTGGTCCAGAGGCAGAggatggcagagagagaggctcaGGTCCCGAGGCAGAGACAGGTGCAGATGAGGAGAGACAGCGAGGGGAAGACGGGCCCTCAGGGGCTCCAGCAGGTgcgggaggaagagagggatgagggggaggtggtggagggggagagCAGGCGGAGGAGCAGCCGGGAGGCGGAGGCGCTGCTGCTGCGCCAGGGGAACTCCGCTCAGCATTCCCGGAGGTCAGAGCCACTGAGACAGGGGTCCCGGCCCCTGGAGGGCGAGGGCCGGGTGTCCCAGCGTCTGCAGCAGCagagggaggtggaggagagTGTGCAGCAGCTGCAGAAGAACGGCCTGCAGGCCCAGCTGCCCCAGActggcacaaacacagcagTGTTCCAGCGCATCTCCCCACTCTTCTCCTCGCAGACAGAGGCACAGGCAGACCCCTGCGCGCCCCTCCCCGGCCCCCTGCTGGAGGCCCAGGACCCAATGGAGTTGCGGCTGGTGCTGCTGGGCAGCTCGGGTGCGGGAAAGACCTGGGTGGCCAACTTGCTGATGGGGGCGGGCTCAGAGGCCTTCCCGGGGGAGGGGGTACCCACACAGGCCTGCGCCAAGAGGCGGGGGGGGGCCTGCGGGAGGCGGCTGGCAGTAGTGGACACGCCTGACTGGTTCCGGTCTGAGCACCCCGCCGCGGAGGTCAGGGACCAGGTGGGGCGCTGCGCGGTGCTCTGTGCCCCGGGGCCCCATGCCTTCCTGCTCTGCGTGCCGCTGGACCGCCCCCCCCACCAGGAGCTGGCCGCCTTGGATGCCCTGACCGCCGCTTTTGGGTTGGGGGTGCCCCGGCACACACTGGTGTTGCTGACGCGCGTCGAGGGACTCCCGGCGGGCTCGGGCAGCGTGGAGGATTACATCATCAAGGAGCGCCCCGACCTGCAGGAGCTGGTGCACCGCTGCGGGGACCGCTACCACGCGCTGGGGCAGAGAGGGGTGGTGGGGGACTGGGCgcagctgcaggagctgctggagaagGTGGAGCAGCTGGTGGCTGAGAACAGAGGGCAGTGCCACACCTGCCGGCTGTTCCAGGAGGCCGAAGCCAAGATCCGCCAGCGGCAGAAGGAGATCCTGAGGCAGAGGGGGCAGGGCGAGGAGCGGGGCGGGGGGAGCAGGGAGACGCTGCTGAGGGAGACCCGGACCAGCGGGGTGCTcctggaagaggaggagggtcTGCAGCGGCGCAAGAGCaggctggaggaggagagggcCCGGGCCGAGGCGGAGGCCTGCGAGTACCAGCTGTCCGTGCCGCCCCTCGCCAGCCCCTCCGCTCTGGCCGCCGCCCCCGCCACGCTGGCCGCCAGGGTCGGCGCCCTGCTGGTGGCCCTGCTGAGACGCATCCCCCAGGTCACGGGCGCGGCGGGGGTGCTGGGGGGGCTGACGGGGCTGTTCGTGGGCGGGCCAATGGGAGGGGCGGTGGGGGCCACGGTGGGATCAGTGCTGACGGAGGTGGGCAGACGGAAATACAGAGTGGAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92912 lncRNA downstream 31649 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 54222 39463079 ~ 39477104 (-) True G74414
TU92894 lncRNA downstream 77363 39453653 ~ 39453963 (-) True G74413
TU92875 lncRNA downstream 130097 39338330 ~ 39401229 (-) True G74395
TU92884 lncRNA downstream 152173 39378175 ~ 39379153 (-) True AMCG00014906
TU92932 lncRNA upstream 33835 39570678 ~ 39571406 (-) True G74446
TU92952 lncRNA upstream 53653 39590496 ~ 39591405 (-) False AMCG00014914
TU92961 lncRNA upstream 86511 39623354 ~ 39624793 (-) True G74469
TU93009 lncRNA upstream 162720 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 199201 39736044 ~ 39736401 (-) True G74510
AMCG00014906 mRNA downstream 152210 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 245979 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 261082 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014901 mRNA downstream 314228 39205047 ~ 39217098 (-) True AMCG00014901
AMCG00014902 mRNA downstream 354665 39138823 ~ 39176661 (-) True AMCG00014902
AMCG00014914 mRNA upstream 53715 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014915 mRNA upstream 55771 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014917 mRNA upstream 103568 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 111961 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 225727 39762570 ~ 39764640 (-) True AMCG00014920
TU92854 other downstream 270966 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 610973 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 886788 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1040386 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1098451 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 101056 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 364627 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 398050 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 407887 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 447851 39984694 ~ 40012081 (-) False G74593

Expression Profile