RNA id: AMCG00014911


Basic Information

Item Value
RNA id AMCG00014911
length 2391
RNA type mRNA
GC content 0.63
exon number 16
gene id AMCG00014911
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39630690 ~ 39636561 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGATTCGACGACCCGGGCATCTTCTACAGCGAGAGCTTCGGCGGCGAGGCGGCGGGGGAGGAGGGCTCTCTGAGGCGCAGCCAGGCCAAGAAGCGCTTCCGAGAGGATGAGCTGAAGCGACACTACACGCTGGGGCAGTACTGGGTGGAGGTGGAGCTGGAGGACCTGTCCAGTTTTGACGAGGATCTGGCCGACTGTCTGTACAAGCAGCCCAACGAGCACCTGcccctgCTGGAGGAGGCGGCTCGTGAGGTGGCGGATGAGGTCACCAGGCCCCGCCCCCAGGGTGAGGAGACGGTACAGGAAGTGCAGGTCATGCTCAAGTCCGAGGGCAACCCCTCCAGCATCCGCACCCTGAAGtcTGAGCAGGTGTGCCGGTTGGTGAAGGTGCGGGGCATCGTGGTGTCTGCGGGGGGGGTGCGGGCGCGGGCGCTGCGTGTGTCCTTGCAGTGCCGTGGCTGCCGCTCGCTGCTGCCCCCGGTCACCCTGCCACCTGGCCTGGAGGGCTACAGCCTGCCCCGCAAGTGTAACACggagcAGGCGGGTCGGGCCCGGTGTCCAGTCGACCCGTTCTTCGTGGTGCCAGACCGCTGCCAGTGTGTCGACTTCCAGACGCTAAAGCTGCAGGAGCCGCCAGATGCTGTGCCTCATGGGGAGATGCCACGCCACCTGCAGCTGTACTGCGACAGgtaccTGTGTGACCGGGTTGTTCCTGGTAACCGGGTCACTCTGATGGGCATCTACTCCATCCGCCGGGCCGGCAAGCCCAGCACCAAGGGCCGGGACAGGGCGGGGGTGGGGCTGCGGGCCTCGTACCTGCGCGTCATCGGCATCCAGGTGGACACGGAGGGCGCAGgGCGCAGTGTGTCGGGCTCAGTGTCCCcccaggaggaggaggagttgcGCGCGCTGGCGGCGTCGCCCAGCGTGTATGAGGCCCTGGCGCGGAGTATAGCGCCTTCCATCTACGGCAGCCAGGACCTGAAGAAGGCCATCGCTTGCCTGCTGTTTGGCGGCTCCCGCAAGAGgcTGCCAGACGGTTTGACTCGCAGGGGTGACATTAACCTGCTCATGCTGGGGGACCCCGGAACGGCCAAGAGTCAGCTGCTCAAATTCGTGGAGCGCTGCTCCCCCATCGGGGTGTACACCTCAGGAAAGGGCAGCAGTGCGGCTGGCCTGACGGCCTCGGTCATGCGTGACCCTGTGACCCGGAATTTCGTCATGGAGGGAGGGGCTATGGTGCTGGCGGACGGGGGAGTGGTCTGCATCGATGAGTTCGacaagATGCGAGAGGATGACAGGGTGGCGATCCACGAGGCCATGGAGCAGCAGACCATCTCTATAGCCAAGGCGGGCATCACCACGACACTGAACTCACGCTGCTCGGTGCTGGCGGCGGCCAACTCTGTGTTCGGGCGCTGGGACGACACGCGCGGCGAGGACAACATCGACTTCCTGCCCACCATCCTGTCCCGCTTCGACATGATCTTCATCATCAAGGACCAACACGACCAGCAGAGGGACGAGACGCTGGCTCGGCACGTGATGGCGGTGCACCTCAGCGCGCTGACGCAGACCCAGAGCGTGGAGGGTGAGATCGACCTTGGCCAGCTCAAGAAATACATCGCCTTCGCCCGGGCGCGGTGTGGGCCGCGTCTATCGGCGGGGGCAGCAGAGAAGCTGAAGAGCCGCTATGTAGTGATGCGCAGCGGAGCGAGGGAGCatgagcgagagagcgagaacAGGCCCTCCATCCCCATCACTGTCCGGCAGCTGGAGGCAGTGGTGCGCATCGCAGAGTCTCTGGCCAAGATGAGGCTGCAGCCGTTCGCGGGGGAGGCCGAGGTGGACGAGGCACTGCGGCTGTTCCAGGTGTCCACGCTGGACGCAGCCCTGTCCGGCAGCCTGACTGGAGTGGAGGGGTTCAGTACTCAGGAGGACCAGGAGCTCCTGTCCCGTGTGGAGAAGCAGCTGAAGAGGCGATTCGCCATCGGCTCCCAGGTGTCCGAGCACAGCATCGTGCAGGACTTCATCAAGCAGAAGTACCCAGAGCAGGCGATTTACAGGGTCCTGCAGCTGATGCTGAGGAGGGGCGAGATACAGCACCGCATGCAGCGCAAAGTGCTCTACCGCATCAAatagaccacacacacactgccacgtGTACACGCactcagacacgcacacacacacactgacctctACTGCATCGCACATAGAGATATTCACACACAGATGGTATGAATATCATCCCCCCACTCTGCCCCTCTGCGCAGCTCTGGCCTGTTGCTATGGACGGTAGATGCCCATGGAGACCCCCTCTGTGCTTCTGTCCCTCCCTTCGTTTCTCgttttgtattgaaaatgtgtataagaaaaataaaa

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92947 lncRNA upstream 28592 39601852 ~ 39602098 (+) True G74459
TU92921 lncRNA upstream 42183 39587413 ~ 39588507 (+) True AMCG00014909
TU92928 lncRNA upstream 45531 39584922 ~ 39585159 (+) True G74442
TU92905 lncRNA upstream 131030 39498703 ~ 39499660 (+) True G74422
TU92830 lncRNA upstream 148983 39476816 ~ 39481707 (+) True G74363
TU92983 lncRNA downstream 11268 39647829 ~ 39659512 (+) True G74484
TU92997 lncRNA downstream 22972 39659533 ~ 39659958 (+) True G74491
TU92991 lncRNA downstream 45694 39682255 ~ 39722288 (+) False G74486
TU92992 lncRNA downstream 58601 39695162 ~ 39722288 (+) True G74486
TU93013 lncRNA downstream 89905 39726466 ~ 39734537 (+) True G74505
AMCG00014912 mRNA upstream 4490 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014913 mRNA upstream 9672 39618808 ~ 39621018 (+) False AMCG00014913
AMCG00014909 mRNA upstream 42411 39584038 ~ 39588279 (+) False AMCG00014909
AMCG00014907 mRNA upstream 55102 39565733 ~ 39575588 (+) True AMCG00014907
AMCG00014908 mRNA upstream 100879 39511772 ~ 39529811 (+) True AMCG00014908
AMCG00014919 mRNA downstream 70500 39707061 ~ 39707433 (+) True AMCG00014919
AMCG00014918 mRNA downstream 70973 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014922 mRNA downstream 195907 39832468 ~ 39846425 (+) True AMCG00014922
AMCG00014923 mRNA downstream 234874 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014921 mRNA downstream 239639 39876200 ~ 39887566 (+) True AMCG00014921
TU92948 other upstream 9504 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 154871 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 819562 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1197829 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2112284 37518108 ~ 37518406 (+) True G73850
TU93044 other downstream 228521 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 229059 39865620 ~ 39872003 (+) False AMCG00014923
TU93040 other downstream 236579 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 314627 39951188 ~ 39953257 (+) False AMCG00014925
TU93084 other downstream 327207 39963768 ~ 39972411 (+) True AMCG00014928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050045 True 2617 mRNA 0.50 16 NC_007114.7 25999477 ~ 26011440 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_04229970_04238150.mRNA True 2528 mRNA 0.51 16 CI01000034 4229970 ~ 4238467 (+)