RNA id: AMCG00014915


Basic Information

Item Value
RNA id AMCG00014915
length 2085
RNA type mRNA
GC content 0.67
exon number 10
gene id AMCG00014915
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39592614 ~ 39599496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGCGCAGCGCTACTGCACACTGCGCAGCTCGGCGGACACACCGGGCTCCCTGTCTGTGTATTGAGTGTGTAGGTGGAGGGGTGGGGTGACTGGTATGCAGTTGTCCTCGGTGCCGCTCTCTCTGCTGCCCCTGCTGGCCGCCCAGTGCCTCTGTAGCCTGGCGGATGGGCCCCACCCCCGTCGCCATGACTACTGCGTGCTGGGGGCTGGGCCGGCGGGGCTGCAGATGGGCCACTTCCTGCAGGAGACGGGCCGCGATTACGTCATCCTGGAGCGGAACCACGAACCGGGCAGCTTCTTCGCCATtTACCCCCGTCATGGCCGCCTGATCAGCATCAACAAGCTGTTCACCGGCCGGCACAACCCGGAGTTTAACCTGCGCCACGACTGGAACTCCCTGCTGGGGGCGGTGCGGGGGCGGGGTCAGCCCAGGGCGCCCCTGTTCTCGCGGGTCAGCTCTGCCCTGTACCCCCCCGCCCACAGCCTGCGCCGCTACCTCTCCCTGTTCGCCCAGGAGCTGCGGCTCCGGGTGCGCTATGGCGTCGACGTGGCTGGGGTCAGCCAGGGGACTAGCCAAGGTAATGGTGAGAAGGAGTGCGACCGATTCGACCAGAGCCAGAGCTACACCCTGACTGACCAAGAGGGACTGAACTACACCTGCAGggtgctGCTGGTGGCCTCAGGGCTGTGGGAGCCCCAGCAGGTGCGCTTCCCGGGCTGGGAGGCGGTGGAGGGGTACGAGTCCCTGCCCCGGGATGGCTCCGGGTTCCAGGGCCAGGCCGTGCTCATTCTGGGCAAGGGCAACTCCGCCTTCGAGACGGCTGCAGCCCTGCTGCCCCACACCGCCCGCATCGCCCTGTACAGCCCGCGCCCCGTGCGCCTCGCCTGGCAGACGCACTATGTTGGTGACCTGAGGGCAGTGAACACAGAGCTGCTGGACACCTACCAGCTCAAGTCTCTGGACGGGCTGGTGGACGGCTCGGTGGAGCAGCTGGCGCTGGTGCGGGACGCACGGGGCCGACTGCACGTCACGCTGGCTGAGCTGCTGCGTCTGCACGGCAACGACTCTGCGGCCACGCGGGCCGCCCATCACCACGACAACTTCTCCCTGCGCCGGCCCTTCGACCGCGTTGTGCGCTGCCTGGGCTTCAGGTTCAACTCCTCCATCTTCCACAGTCGCTGTGCTCTGGCTCTAACAGTGCTGTCCCTGTCCTGCAGCTCGGCGTGCCCCAGGCGGGCGGGCGTGGCGCGGGGCCGGTTTCCGGCGCTGTCGGCCTGGTTCGAGGGGCGGGGCTTGCCTGGCCTGTTTGTGATCGGCGCCGCTGCCCACTCCCGGGACTACCGCCACTCCGCTGGCGGCTTCATCCACGGCTTCAGATACACCGTGCGTGCTGTCCACCGTATACTGGAGCAGCGGTACCACGGCCACCCCTGGCCGGCCGCCACCCTGCAGACCAGTCAGCTGCTGAGCGCCATCCTGAGGCGGGTGAATGAGGCGTCCGGACCGTACCAAATGTTTGGGATGCTGGGGGACATCATCCTGCTACAGGGGGACAGTTTCCAGTACCTGGAGGAGTTCCCTCTGCAGGCTCTAGCCCAGCTGACAGCTCTGACAGGCCGGGCAGTGGGACCAGGGGGGCTGCTGGTGCTGGTGATGGAGTATGGACACAGCCTGACCGACTCACTGGGTCAGAACCGCTCCATCACGGACTGGGCCCTGGCCTGGAAGTCCAACTTCCTGCACCCAGTCCTGTACTACTACAACACCCTGCCCAGCGAGCGGGACATGAGGCTCCGCCCCCCTGGCTGGCCATTGCCCCGCCCCCAGGCTCTGCATCACATAGTGGAGGACTTCCTGACGGAGTGGGAGGGGCCAGTGTCCCACAGCCAGCCGCTGCGCCGCTTCCTGGAGCACtgcctgacctctgacctccgcACGTTCTACGCAGTGGAGGCGGGGCTGATGGAGGACTTCCACCCCGAGCTGGCCAATGAGAGTGGAAGGACCCCGCCCTTACCCGGTCACATGACACGGACCGGGGCTCAGCTGACCAGGGTCGGTGTCAGCAGGGATGACCTCTGA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92952 lncRNA downstream 1209 39590496 ~ 39591405 (-) False AMCG00014914
TU92932 lncRNA downstream 21208 39570678 ~ 39571406 (-) True G74446
TU92912 lncRNA downstream 92937 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 115510 39463079 ~ 39477104 (-) True G74414
TU92894 lncRNA downstream 138651 39453653 ~ 39453963 (-) True G74413
TU92961 lncRNA upstream 23858 39623354 ~ 39624793 (-) True G74469
TU93009 lncRNA upstream 100067 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 136548 39736044 ~ 39736401 (-) True G74510
TU93021 lncRNA upstream 144632 39744128 ~ 39744359 (-) True G74512
TU93024 lncRNA upstream 154199 39753695 ~ 39753938 (-) True G74515
AMCG00014914 mRNA downstream 956 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014910 mRNA downstream 55771 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014906 mRNA downstream 213498 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 307267 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014903 mRNA downstream 322370 39263141 ~ 39270244 (-) True AMCG00014903
AMCG00014917 mRNA upstream 40915 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 49308 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 163074 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014924 mRNA upstream 221067 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014927 mRNA upstream 359329 39958825 ~ 39960996 (-) True AMCG00014927
TU92854 other downstream 332254 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 672261 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 948076 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1101674 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1159739 38432263 ~ 38432875 (-) True G74115
TU92969 other upstream 38403 39637899 ~ 39638957 (-) True G74477
TU93111 other upstream 301974 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 335397 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 345234 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 385198 39984694 ~ 40012081 (-) False G74593

Expression Profile