RNA id: TU93044



Basic Information


Item Value
RNA id TU93044
length 935
RNA type TUCP
GC content 0.51
exon number 7
gene id AMCG00014923
representative False

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39865082 ~ 39875428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gggagagagagggggtgaggcagagggagagcgagagaaagcctgccagagagagagagagaaacagagacagagaacaagagagagaggcagaaatAACTCTTGTGTCGACCAGCTGGGAGTCGTGCTAATACAGAGAAGGACAGacattcagacagacagacggtcAGTTGGTCAGTGAAGATGTCCAAGctgttgcagtgtgtgctggTCAGTGTGCTggtcactctctcactctcctacGATTCCCATGAGAGCAATGAATCAACTGAAGACCTGTTTGTCTCCAAGTTCAGAGCAAACTCGTTCATCAACCGCCCCCAGCAGGGCCGAGCCCCTGCCACTGACCCTTTCAACGCGGCCTACAGCACCCAAAGGAGgtACGGTGTGAAGTCGGTGCGGGAGAGACGCTCTGAGATCTGTGAGGATCACACCATGTGTCGCTTCTACGCTTATCGCTACGGTTATGACCAGGCCTATCAGCACTACTTCGGAGGGCAGGCCCAGATGCAGGGGCGGGGCCAGTCACAGGGGTGGTACTAATGCTGAACGCAGTAATCTGTTAATGCAGAGAAGGTCCACAGAGCAGGCCCACTAACATATAGGCATGCAGAGTTCAATATATAGTGACATATATaaacacccacacccacacacagagaaCACTCTcctcacacacttacactcactcttacacactcttgctcatacattttatatcatatatttttgtatgtagaTTTATAGAAATGTTAGCATAGGACACATGTACTCCCTCTCTCTAGCCCAGTGCCACGGTGGGGCAGTGTACACGGGCAGACCCATTCCCACAGGTGCAGAGGGCATCCCTGTCTGAACATCCTTGTCTGAGTACacgtgtgtcgtgtgtgtgtacacaccCTGTAACGCcaataaaaaacagctttgatacaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93030 lncRNA upstream 24464 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 109418 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 112531 39752197 ~ 39752551 (+) True G74513
TU93020 lncRNA upstream 120722 39744125 ~ 39744360 (+) True G74511
TU93013 lncRNA upstream 130545 39726466 ~ 39734537 (+) True G74505
TU93093 lncRNA downstream 115499 39987502 ~ 40006654 (+) True G74557
TU93177 lncRNA downstream 229890 40101893 ~ 40138259 (+) True G74615
TU93222 lncRNA downstream 359614 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 360771 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 412898 40284901 ~ 40286138 (+) True G74656
AMCG00014922 mRNA upstream 18657 39832468 ~ 39846425 (+) True AMCG00014922
AMCG00014918 mRNA upstream 157330 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014919 mRNA upstream 157649 39707061 ~ 39707433 (+) True AMCG00014919
AMCG00014911 mRNA upstream 228521 39630690 ~ 39636561 (+) True AMCG00014911
AMCG00014912 mRNA upstream 238882 39623426 ~ 39626200 (+) True AMCG00014912
AMCG00014921 mRNA downstream 4197 39876200 ~ 39887566 (+) True AMCG00014921
AMCG00014926 mRNA downstream 16097 39888100 ~ 39899640 (+) True AMCG00014926
AMCG00014925 mRNA downstream 79186 39951189 ~ 39953278 (+) True AMCG00014925
AMCG00014928 mRNA downstream 98260 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014929 mRNA downstream 113302 39985305 ~ 39990486 (+) True AMCG00014929
TU92948 other upstream 243896 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 389263 39336268 ~ 39475819 (+) True G74348
TU92678 other upstream 1053954 38810693 ~ 38811128 (+) True G74227
TU92541 other upstream 1432221 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 2346676 37518108 ~ 37518406 (+) True G73850
TU93040 other downstream 1137 39873140 ~ 39875428 (+) True AMCG00014923
TU93074 other downstream 79185 39951188 ~ 39953257 (+) False AMCG00014925
TU93084 other downstream 91765 39963768 ~ 39972411 (+) True AMCG00014928
TU93214 other downstream 287898 40159901 ~ 40160578 (+) True G74642
TU93215 other downstream 290013 40162016 ~ 40163997 (+) True G74643

Expression Profile