RNA id: TU93074



Basic Information


Item Value
RNA id TU93074
length 789
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00014925
representative False

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39951188 ~ 39953278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acacaaacacacagtttaAACCCCCAACAGTAAACACAGCAGCTCCACAGCTCAGCTAATGTGTCGCAAGGGCTGAACTGGCTACAGTGAGTTGAAGCAGAGAGGACAGAGGAGACACTACACTGCAGTGGACACCTGGGAGCAATGGAGAAGCCCAGTAGGACAGAAATCTCCCAGGAAGCCCCTGGCCTGACAGaggagatggacagagagagATCTCAAACGACTCTTTGGCCTCAGTCCAGGATGATGGACAGCAGACATgtgatgtcacttcctgttGAAACCCGCTGTCTGCCAGGCCTGACGTGGAGCTGTCTGTCCCAATCTGTGTTTGAACACCTGTCGAACCCTGGTCTAACCCTGGTGGAGTTGGGGAAGACTGGCCCTCTGAAGCTCTGGTCTCAATAGCAATCGCCCCAGTGCTGTCAGATATCTAGGAGGGCTGAGATCTGCTTTGTTTGCCGTGATTATCTGGTTCCTCGGCTGTGAACTCGTTGTGTtgtgtgcactttatttaacCTCACAGGACTGATTGTTTTCTGATTGTGCAAAAGATGTTTCCTTACACACACTCTTCTCCTTGCTTTAGCTTTAGCTCACCCCTCTCTCTTGGGGTCAGACCAGCGCTTTTAAATCTTCTGTATTTTTGAGACTTCAGTTACTCCAGTCTCTCTATCACATCAGCAGAGCCTTTGGCATTCAAGCAGGAGCCACCATATGGCAGCTTCCAGTACTGCGTCCACCTTGCTCTTGTTCTACATACACGTGCTTTATGTGATTGCTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93030 lncRNA upstream 110570 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 195524 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 198637 39752197 ~ 39752551 (+) True G74513
TU93020 lncRNA upstream 206828 39744125 ~ 39744360 (+) True G74511
TU93014 lncRNA upstream 216651 39733723 ~ 39734537 (+) False G74505
TU93093 lncRNA downstream 34245 39987502 ~ 40006654 (+) True G74557
TU93177 lncRNA downstream 148636 40101893 ~ 40138259 (+) True G74615
TU93222 lncRNA downstream 278360 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 279517 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 331644 40284901 ~ 40286138 (+) True G74656
AMCG00014926 mRNA upstream 51548 39888100 ~ 39899640 (+) True AMCG00014926
AMCG00014921 mRNA upstream 63622 39876200 ~ 39887566 (+) True AMCG00014921
AMCG00014923 mRNA upstream 76083 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014922 mRNA upstream 104763 39832468 ~ 39846425 (+) True AMCG00014922
AMCG00014918 mRNA upstream 243436 39707534 ~ 39707752 (+) True AMCG00014918
AMCG00014928 mRNA downstream 17006 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014929 mRNA downstream 32048 39985305 ~ 39990486 (+) True AMCG00014929
AMCG00014931 mRNA downstream 160871 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014932 mRNA downstream 194166 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014936 mRNA downstream 235452 40188709 ~ 40206799 (+) True AMCG00014936
TU93040 other upstream 75760 39873140 ~ 39875428 (+) True AMCG00014923
TU93044 other upstream 79185 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other upstream 79185 39865620 ~ 39872003 (+) False AMCG00014923
TU92948 other upstream 330002 39606887 ~ 39621186 (+) True AMCG00014913
TU92814 other upstream 475369 39336268 ~ 39475819 (+) True G74348
TU93084 other downstream 10511 39963768 ~ 39972411 (+) True AMCG00014928
TU93214 other downstream 206644 40159901 ~ 40160578 (+) True G74642
TU93215 other downstream 208759 40162016 ~ 40163997 (+) True G74643
TU93243 other downstream 378730 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 384958 40338215 ~ 40340395 (+) False AMCG00014940

Expression Profile