RNA id: AMCG00014927


Basic Information

Item Value
RNA id AMCG00014927
length 1154
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00014927
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39958825 ~ 39960996 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGTGGGGGAGTTCGGGTGATGAAACTAGTCACACATACGAGTTTACTCTGAGATTACTATTATAAtctgtgattactattactatatttgtactgtgtaatttactgtataattattataacattggttactataacattattatattgttgcTGTAGGACTATGACTTGCTGTACTGTTGCTGTGATGTGTTGATGTCtgttcagtgtgtgagtgaAGTGTTTTCCCAGCAGTACAGGGCGACTGCTTAGTGTAGCCAGAGGAATAGGGCAGTGCTTTTGTTTCCCCGTCTCcctgtgtgtccatgtgtgtttctgtgtcccTGTGGTACTCTGTGTTCTGTCCGGTGTCAGTGTGTCCTGACTCTCTGTCCGTGTATGCAGGTGAACAATGCCACGGCCAGAGTGATGACCAATAAGAAGCTGGTCAGCCCCTACTCCAACGGAGAGGCTCTCAGCTCCCTGCCCTACGGCTGGAAGCTCAGTCCAGTTGTGGGTGCCATGTATGGACCGGAGCTGTATGCagATGGCTTCTATGGCGCTGACCTCTATggtGGCTACACCGCGTATCGCTATGCCCAGCCCACCGCTGCTGTTACCGGGGCAACTGCTGCAGCTGCCGCCGCCGCTGCGTACAGTGACAGTTATGGGCGAGTCTACACCACCGACCCGTACCACGCCCTGGCCcctgccgccgccgccgcgtATGGAGTCGGAGCCATGGCCAGTCTGTACCGAGGGGGATACAGCCGGTTTGCCCCATACTGAAGCCATGCGTAGTTCCTGGGAGGAGGATGTAGCGCCCCCTAGCCCACAGCCTGGGGTCGGCACCCGTGGCCCCAACAATCACAACCGACGACAACGACGACACAAACTGCAACAGACACCaccaaccccccctccccccctccacacacacctGCATGCCTGCCGCTGCGCAGAGGGAGGACATCCCAGACTGAGGACAAACAGAGCTGGAGCGCAAGCCAGGGCTACACCTCGGCCGCCGCAGGGACTACACAACACAGGAACTGAAGAAAGGATGGAGGAACGAGGGGATTGTGAAGGGGGGGTGGATACAATGCTGAGAAGAGGAGGAATACAAGCCACAGTGAGAGGAGGACAGGAGCGGAAACAGGcccaggagggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93024 lncRNA downstream 204887 39753695 ~ 39753938 (-) True G74515
TU93021 lncRNA downstream 214466 39744128 ~ 39744359 (-) True G74512
TU93019 lncRNA downstream 222424 39736044 ~ 39736401 (-) True G74510
TU93009 lncRNA downstream 256231 39699563 ~ 39702594 (-) True G74501
TU92961 lncRNA downstream 334032 39623354 ~ 39624793 (-) True G74469
TU93159 lncRNA upstream 1934 39962930 ~ 40005067 (-) False G74597
TU93158 lncRNA upstream 26506 39987502 ~ 40005067 (-) True G74597
TU93149 lncRNA upstream 50073 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA upstream 50073 40011069 ~ 40012081 (-) False G74593
TU93153 lncRNA upstream 50073 40011069 ~ 40012081 (-) False G74593
AMCG00014924 mRNA downstream 136736 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 194185 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 301263 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014917 mRNA downstream 317569 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014915 mRNA downstream 359329 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014930 mRNA upstream 68776 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014935 mRNA upstream 124780 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014933 mRNA upstream 192423 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 201390 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 274062 40235058 ~ 40268485 (-) True AMCG00014938
TU93146 other downstream 7755 39944730 ~ 39951070 (-) True G74591
TU92969 other downstream 319868 39637899 ~ 39638957 (-) True G74477
TU92854 other downstream 698465 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 1038472 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 1314287 38597368 ~ 38644538 (-) False G74160
TU93152 other upstream 23698 39984694 ~ 40012081 (-) False G74593
TU93302 other upstream 275406 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 331160 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 342235 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 440787 40401783 ~ 40405328 (-) False AMCG00014951

Expression Profile