RNA id: AMCG00014929


Basic Information

Item Value
RNA id AMCG00014929
length 3645
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00014929
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39985305 ~ 39990486 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaccacaaaaaaaaaagcgagAGCTACTATTGTTGGTTACCATTGGTTTAGTACAGTGTCGGGGCGGGTTGCTGCGGCCGAGATGGTGGAGCCCCGCTCTCGAGTGTGGCTGTGGCCGTGTCTGCTGTGCCTGCTCTCCCGCCTGGACCCCGGGACAGCCCGCGGCCTCCCGCTGCCGGACAACTCCCTCCCGGCAGAGGGAGCGGGGAGAGGGGCAGGAGAGCCGCCGCGGGCGGAGAGGACCGGCTACCAGGAGGACGCGAGGGGCGTGTTTTCTCCGTCCTTCCCGCGGTCTCTCCCCGCCTCACCCCCTCCTCTGCGGGGCCGGAGCAGCAGCGCCGCGGCTTTAGAGGCGGATTCGGCGACAAACGTCCCCCCTGGCGGCGCAGGGCGGCCCGCGACGCCTGGGAGAGGCCGGGGGGCGGCGGGGGTCTCGCCCGAATCCACGACAGCCGAGGAGCGGGAGGCGCTGCGGCCGTGGGAGGGAGACGAGTACCCCGACGACTACGAGTACGACCATCCAGAGGACCGCGATGTCGGGGAGGCCACTCCGCCGGCGGAGGCACAGGGGACGGCGGTGGGGGGACGGATGACTAGACTCCCTGAGGAGGGGGGAGGCGCAGTGGATGAGCCCGGCCTGCTCTTGGGCGACGCAGAGCTGGTCAGTGACTACGAGCTGGACGCCCTCTTGCCGTCCTCGGGGGTGCCCGGGGCCGAGGCGCTGCTGCGGGATGAGCCGTCTCTCCGCAGCCGCGGCGCAGAAGACGACCTGGACTACAGCTACTATTGGGATGATGCTGCCAGCTTCCAAGGCGACGAGGCTCCGGCAGCGCTGACCCCGGTCCTGCCCACTGCTGCTCCGGCCCTGTCCGGGGTCAGTGCCCCGCTGGACATCTCTGAGGAGAAGGGAGGCATGGAGGCATCGGGGGAGTCTGCGGAGAAGATGCAAGCGGGGGGGCTGGTGGCCAGTCTTCGCAGGCGATCTGGGAAGAAGTGCGCTAAGAAACTACTGAATTCAGCCACCCTCACTCTGGCTCCCCCCATCAGCCCCAGCAACGGCCCAGATGCCATTGATCATTGGCCCCCCCAAAGGGACACCACCCACATGCTGACCCTTGCTGCTGCCTCCACTCCTCCTGTATCCCCATCCCTTGTTCCCAGCACCCCCAACCACAATCCCACCGTCCTCCCCACCTCCACTCCACTGAAGCCGGAGTTTGAGCAGCAGCCAGAGCTCGGCCCACCCCCCATAATCTCCCGGGAAATGCCCACCTATGAAAAACTGGTTGAAATGGAAACCATGCCATTGGAGAGGGAGCACTGGATGGTGGAGGTAGAGGAGAGTTTAAGGGAGGAGGCAATCTCCACCCCAAACATCACCCTGATCATCAATCCTAGTCTCCCTGGCCAGGGGGATGACCACAATGCCACTGGCCCGGCTGTGACTCTCGCCTCCACTCCCAGCAGCCTCCACCACCGTCCCGCACCTCCCCGAATCCTGCCTGAGCCCCAGAGTATGGATGGAGTGATGTATGTATCCCAGCTCAGAGAGGCAGAGGTTGAAAAGGATGGAGGTAGTGAGAGGGCAAGGGGGTATATGGCAGTCCAGCCCAGTGGAGAAGTGAGCGAGGAGGTGGCGCACCGCAAGGCAAGTGGGGTAGCTGGCGGGGTGATGAGGCCGAGTGAGGGCGGCTCCCAGCTGGTGTCGGACTCTTCTCTGGATGTTTCCCATTGGAGGGATGGTGTGGGTGAGGCTAATCCAGCCTATTACCCTGCCCTGGAGCCGGTGCCAGAGAGCATGGAGGGGGAGGGCAGGAAGCTGGGGGCAGCAAAGGTCATGGAGAGACGTCCCAAGCTGCAGCAGCACCCTTCCCAGGGaatgagagaggagaggaggggtgggagaAGGGGGCCCTCTCGCCCGGCCCGCCCTAAGCACCAACCCACCCACAGAGCTCAAAGACCCTGGCTGCCCAAGAAATCCCTGGCCTCCCAGTTCAAGCCCCCCTTCCCTGACTCCGTCCCCCCCGTGGGGGCTGGCAGCCTGCCCACAGAACGCTGCCCTGTGGTTGTCCTCCCGGAGTCCTCGCCTGACCCCCCAGTGAAGGGCTGTAACATCAGTGTTGCCCTGCAACTGCCCTGTGGGGGGCCGGACATCTCCCCGACCCACTGCCTGACCCGCCGTTGCTGTGTGGACCGAACCACCGGAGGCTGCTACTTCCCCCTGGAGACGTGTACGAGGGACGGACGAGCTGTGTTCCTGGTTCGGTGGGACGATGTGGTCCCTGCAGTGGACCCCCGCTCGCTGGTGGCTGGACCCAGGGGCTGCTCACCTGCCAAGGTCACGTCATCCTTCGCCCTGTTTCACATCAACATGAAGGACTGCGGGGCCAATGTCACGTTGTCCGGCCAGACTAGGACCTACTCCCTGAGTGTGCGCAGCAAGACGCTGGTCACCTCCCGGGCCCGCTATGGCCTCATCAGCAGAGACCAGCCCTACAGCTCAGAGGTGCAATGCTCTCATCACCATGGCTCCCTCTCCTCCGCTGCCTTCCTGGTCAAAGACCTGCCCCCCCCCAAGGCCGTTGCCACTGGCAGCCTGCGCGTCCAGCTCCGGGTGGCCACAGGTGCAGTATTTGTCCCCCTGGATATGGGTTACAGTGCCTACTACCCCGAGTCAGCCCTGCCCCTGCGCCTCAGCCTGAAGAGCCCCCTGTACATGGAGGTGCACTTGGTGGCCCCCCCCGAGCCCAGCCTGGTGCTGCTGGTGCACTACTGCCTGGCCTACCCCCCCTCTGCGCAGGCAGCCTGGGTCCTGCTGTATGACGGCTGTCCCAATGACCTGGACCCCTCCGCGGTGCAGCCTCTGGCCCAGGCCTGGGACCGGCCTCAGTTCTACAAGCGCTTCAAAGTGGAGACCTTCCAGTTCATCAACCCCGACACGGGAGCCTACCTGCAGGAACAGaTGTACATCATGTGCTCCACAGAGGTGTGCTCCCCCAGCATGAAGAGCTGTGACGCCAAGTGCTTCAACCCCCAGCGATCGAGAATAGCTGTGCCAGGCTCCAAGCTGCTGCCGGGGGACATCGCAGTGCACCAGGGCCCCTTCCTCATGCCTGTGGGCACCCCACCTCAATAGCATCTGTGTCAGAGgtcaGCCAGGGGTCTTGTCTGAGATCTGAAAATGTACTAAATAAAAGCTTGAAACTCTGCTCCTGGTGTCTCTGCCTGTATCCATCACTGCTGTGACCCCAGGGTGGGTCTACTTTAaaaccagttttatttttatttttcccccttgtACAATTGCTTCACAGTGCTTGATGCATGCTCTCCTTGATGACATCTGCTGGTTAATAATGGTGTTGTGACTGGAATGGCAGCAGTCCTCAACATTGGGGAGGGAATATACAAATTTAACCCGTCCACAAACGTGTCATAAGTATTGCTTTGTCATGAATGTGTAAGTAACCTGTGATGGTTTAGCTTTGTGATCAATATAGAGACTCAAGATGGGATGTTGAATTTTATGGGAGGCAGTAATCTTTCCATGATGACTATTGTATCTCATGCTAAGTACCAACATCCAATAAATGCAACTACCTAAGTGCAGTCTACATTTCATAGCCTGGATATAGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93030 lncRNA upstream 144687 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 229641 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 232754 39752197 ~ 39752551 (+) True G74513
TU93020 lncRNA upstream 240945 39744125 ~ 39744360 (+) True G74511
TU93014 lncRNA upstream 250768 39733723 ~ 39734537 (+) False G74505
TU93177 lncRNA downstream 111407 40101893 ~ 40138259 (+) True G74615
TU93222 lncRNA downstream 241131 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 242288 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 294415 40284901 ~ 40286138 (+) True G74656
TU93239 lncRNA downstream 312746 40303232 ~ 40379753 (+) True G74661
AMCG00014928 mRNA upstream 12235 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014925 mRNA upstream 32027 39951189 ~ 39953278 (+) True AMCG00014925
AMCG00014926 mRNA upstream 85665 39888100 ~ 39899640 (+) True AMCG00014926
AMCG00014921 mRNA upstream 97739 39876200 ~ 39887566 (+) True AMCG00014921
AMCG00014923 mRNA upstream 110200 39871435 ~ 39875105 (+) False AMCG00014923
AMCG00014931 mRNA downstream 123642 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014932 mRNA downstream 156937 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014936 mRNA downstream 198223 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014939 mRNA downstream 220342 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014937 mRNA downstream 229986 40220472 ~ 40224003 (+) True AMCG00014937
TU93084 other upstream 12894 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 32048 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 109877 39873140 ~ 39875428 (+) True AMCG00014923
TU93044 other upstream 113302 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other upstream 113302 39865620 ~ 39872003 (+) False AMCG00014923
TU93214 other downstream 169415 40159901 ~ 40160578 (+) True G74642
TU93215 other downstream 171530 40162016 ~ 40163997 (+) True G74643
TU93243 other downstream 341501 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 347729 40338215 ~ 40340395 (+) False AMCG00014940
TU93241 other downstream 378651 40369137 ~ 40373863 (+) True AMCG00014942

Expression Profile