RNA id: AMCG00014930


Basic Information

Item Value
RNA id AMCG00014930
length 3396
RNA type mRNA
GC content 0.65
exon number 19
gene id AMCG00014930
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40029772 ~ 40039325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTCGGCGCACCGACACGCGCGGACTGCGTGCATTGTACTCGCGCTGGCCTGGAGCTGCGCGACCCTCGACCTGCTCACGGGTTCCGACATTTTGGGCGGCTTCGAGacggaggaggaagaggaggacaaCGACTACAGTACAGGGCTGGATTCTCATATGGATGCCCCCCGAGTGGGAGCTCCCCAGCCCCCGGCAGGCTCCTACTCGAGGCTCGGGGATCCGAGTTCAGCCGCCTCCGCCCTCGGCGGGTGGGGTGATGCGGGGTGGGACAGAGTCATGCTGGGGGACGGTGCGCGTTTGGGCCGACCGGCGTTGGATGACCCGGAAGCAGGAGGCGAGTTCGACTTGGACGCGGAAGAAAGGTCGGGCTCGCTGTCCGACAGAGACCCGGGCCCCTCGCCAGATCACAGCGGCTTCTCCAGACGCGGGGTCGCCGAGCCCGGGACACGGCCCGCCCGACCGAGGCCGCAGGACGCCTTGATGGATCAGGCGAGAGGCCTCGCTGCCAGCGGACACCCCAGCGCGGGTTTGGATGCTCAGAGGTCAGACTGGAAGTTACGCGACCGCGCTGAAGCAGGCCTGCGGACCTGGGCCCTTCCTCCCGGTTCTGACCGCCGAGGGCCGTGGGGTTTAAACCCCCTTATCCCCCCGAGCGACACCAGAACCCACGACCTGCCTCCAGGGAGCGCTGACAACCGAGAGCGCAGCCGTACCGgtctgCAGCTGCCGCAGTCtctgtggggggggcaggggaagGTGTCCGGCCCCCCACCCGGCCTGGCACCCCCCCTGGGCAGGGGAGCGTGGCTGAGCACCGggcccacactgcactgcaacacTGAGAGCATGAGCCTCACGGCCAGGGGCCGCAGAGCTGAGGACCTGCAGATAGAGACGGATGAGTCCCTCATCCCCCTGTCCCAGCTGCCCTCTCATTGTGGACACTCCTGGTTGGTGGGCTGGAGGCAGCTGCGCTTCACGGCCCTGTACCGAGACTGCTACGTGCAGCACAggGCAGGTCAGTATGTGCTGGCAGTGCATTGGCAGGGCCGGCGCTTTGTGATGTCATGCCCATCGGTACCCCCCCGCGTTGCCTGCAGTCCCTCCCACATGAGCGTCCAGCTGGGAGGGGGCACCCTGGAAGGGCTGCGGGTTCGAGGCAAGTGTGCGAGGTCTGTGGtgGCAGGGCGGTGGGTGTCAGTTGGCACAGTGTTGGCACAGTGTGGGTACAGTTGGCAGGGCGGAGGGGACAGCCTGGTGCTCAACGCAAGGTACAGCAGCTGCGGAGTCCAAACTGAGGCAGGGCGTCGCACCCTCTCTCTGCTGTGGGGTGTGAGGGagctggtcctctcctgccctgctgctcccccctcccccccaccacccactgCGCCACGTCTGACCTCCGCAGCCCACCCCTCCGACATCTCCCTCTCTTGTCGTCCGCACAGCTTAGAGGTCTCGCTGCCCTCTGCACAGCCTGGAACTCtggaggtcaaagGGCGCAGTGGCTGGTGGGAGCCAGTAGGGGGCGCTCCTGCTCTGTGCTCCTATTCTGCAAAGACCGGTCTGAGGGGAGTGTTGCTCTTCTCCTCCCCCCTGCCAGGCTGCCACACCCAGTTCCTGCCCCCGgccctgctgtctctctctctccgtttcaACGACCACCTCTTTCGTACGCGAACCCTGGACCTGCAGTGCCCCATGGCCCTGCCCAACACCGCCCCCCTGAAGCCCCACTACGTGACCCCTGACCCTCCCCTCTTACCTCCCCCACCTGTCTCTGTGCCCCCGTTTCCCCCACCTCAGAGACCCTCCCACTCTGCATCTTCTGAGCTGGAAAACCCTCCTTTACTGCCCCCCCTGCCTCTCTACCTGCCCttcaccccaccccccctgccTCAGCTTCTCCACTACCCCACCTACCTAACGCCACACACTCCATGGCCTCTGTttgccccctcccccagccccccccagcTGCCCCAGCCCTCTGTGTCCTGCCAAGGCGGGCAGTTCAAGGTGGATCTGCCTCGTGGACCCCCTAGGGGCATTTGGGTTCAGGCCTCCTCTGGACGCAAGCTTCCTGTGTGGCAGGCcccagtgcattgtgggtactCTGTGCAGCAGGGGGCTGAGGGCACCACTCTGACTGTCCCTTTCACTGGCTGTCATGTCAGCAGACAGggAGGGCTGTTCACTCTGCAGCTTGTCTTCCTcactgtgggggggggcaggcgTGGGGGTGCAGTGTCTTGTCCtgtccccccctccctccagcAGCAAGGCTGCAGTGTGTCCTCAGTGGAGCGTGTCCAGTGTGGACAGGAGGACATGTCTGTGTCCCAGTGCAGGGACAGAGGCTGCTGTGTGGACACGGACACTGGAGGCTGCTACCACCACATGGATGAGTGCTCCAGGGATGGTCACATGGTGTTCGTAGTGCAcagctctctctcctcccccccacTGGACCCCTGGAAGTTGCgtgtggtgggggggtcagAGTGCCCCCCCCCGGTCTGCACCCCCAACCTCGCCATCTTCAAGATACCCCTTTCCGGCTGCGGCATGCGCTCCTTTACAGTTGGGCAGACGACCGTGTTACTGGTGGAGTGCCGGTACTCCAGGGACCGCCTGTCCAGTGCTGGGTTCTTGGTGAAGACACCGTCCCTCCCCCCCAGCCTGCTGTCCCAGGGGGAGATGGGGGTGCAGCTCCGCATCGCCAAGGaTGCCAGTTACTCCCAGTTCTATCCCCAGTTCCACCGGCCCCTGCGCCTGCTGCTGGGGAAACCCCTGTACCTGGAGGTGCGCCTGCTGTCCCCCCCTGACCCCAGCCTGGTGCTGCTGGTGCACTACTGCCTGGCCTACCCCCCCTCTGCGCAGGCAGCCTGGGTCCTCCTGTACGACGGctgTCCCAACCCTCTGGACGAGCAGCACTCCTCCACGCTGCACACCCTGCGTGGTCCCCCCCTCTTCCGTCACCGTCGGCGATTCCACATCCAAGCGTTCCAGTTCCTCAAGCCAGGCCCCCCCTCTGACAGCGAGGAAGAGgTCTATTTCATGTGCTCGACGGAGGTGTGCTCTCCCTCTCAGGGCCCCTGTGTGGAGGGCTGCTTCGATGGCCGCAGTGAGTCTGTACACCCCAAATACCTTCACACTTGTACTCCTGTACACACCTCTTCACACTGCAGCGCTCACACTGTACCTTCAGTCACCTTAATGTGTGGGCGGAGCTCTGGGGCGGtggtaattttaaaagttaaatttaaGGTCTCTGTAGAGGGACCGATTTGGTTTTCAGCCGAACGTGAGTTGCTGGAGAGAGCCGTGCCGGTGTGGGCAGGTACTGCTCAGTACTGGGAGGAGCCCTTGGGACCACAAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93149 lncRNA downstream 17691 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA downstream 17691 40011069 ~ 40012081 (-) False G74593
TU93153 lncRNA downstream 17691 40011069 ~ 40012081 (-) False G74593
TU93159 lncRNA downstream 24705 39962930 ~ 40005067 (-) False G74597
TU93158 lncRNA downstream 24705 39987502 ~ 40005067 (-) True G74597
TU93173 lncRNA upstream 3682 40043007 ~ 40043290 (-) True G74611
TU93190 lncRNA upstream 62568 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA upstream 89596 40128921 ~ 40129366 (-) True G74633
TU93315 lncRNA upstream 257536 40296861 ~ 40299179 (-) True G74725
TU93327 lncRNA upstream 298739 40338064 ~ 40340395 (-) True G74736
AMCG00014927 mRNA downstream 68776 39958825 ~ 39960996 (-) True AMCG00014927
AMCG00014924 mRNA downstream 207683 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 265132 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 372210 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014917 mRNA downstream 388516 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014935 mRNA upstream 46451 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014933 mRNA upstream 114094 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 123061 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 195733 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014946 mRNA upstream 241869 40281194 ~ 40292569 (-) True AMCG00014946
TU93148 other downstream 17691 39934893 ~ 40012081 (-) True G74593
TU93152 other downstream 17691 39984694 ~ 40012081 (-) False G74593
TU93111 other downstream 46376 39901470 ~ 39983396 (-) True G74569
TU93146 other downstream 78702 39944730 ~ 39951070 (-) True G74591
TU92969 other downstream 390815 39637899 ~ 39638957 (-) True G74477
TU93302 other upstream 197077 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 252831 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 263906 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 362458 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 398014 40437339 ~ 40534709 (-) False AMCG00014949

Expression Profile