RNA id: AMCG00014933


Basic Information

Item Value
RNA id AMCG00014933
length 1613
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00014933
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40153419 ~ 40160349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacactcacacacacacacacacacagagccgcTGCTTTACCAGCACGGCGGGTTCACACTGATGCATAGAGACCGATAAAACACgtccatgtttttttctttgtttgtttttataatcgAGCGaccgagcgagagagagggggagggtcGGAGGAGGTGGcggttcacacagacacacttggacacagagaggacggGGCAGGAGACAGTCCACTGTACACGGACTGCGATACAGCGACAGTGCTCTACACGACACACATCTACAACCCAGCGTCCGCCACTGCTGGACTGCGTTAATTAAAGGCACCGGGTCTGACTTAAGTTTCCTGTCCGACATCGTCACCGACCCGACCGGACCGGCCCGCCTCGCCATGCTGGGGATGATCAAGAACTCCCTGTTCGGCGGCACCGAGGAGACGCCGTACAAGGTGCTGAGCTCCGAGAGCAAGGTGTTGGCATGGGGATGACAGCGCCGGTTTCCATAACGACCTTTCCCCGTGACGACGGCTCCCTGGCGCGGCGCTTCGTCATTGGGCTGCGCATCCCCAGCTGCTACCAGGACAACCCGCCCGTTCCCACAGATAGCAGCCTCCGCATCGAGGACAGGCCGGGCATGACCGTCTATGCCCTgcAGTTTGGGGGCTATGCAAAGGAGCTGGACTTCCGCACACAGGCGGCCCGGCTGTGCTCTGCGCTGGGGGACAGTGCCCCCTACCAGCGGgggctgtgtctgtgctgcGGGTACGATCCCCCCATGAAGCCATACGGCCGGCGCAACGAGGTCTGGCTGCTGCAGGAGGAGCCCTAGGCACTGGGGggttctctgtctctctgaacTGGGCTGGAATGGATTGAACTGAACTGGACTGGACGGGACTGGACTGGAGAGTGGATTAGACTTTACAGGATTTGTATTGGACTGGATCAGAATGTTTTGGCATTAAtatgctggactggactgtattcaACTGGGCTATATTGGTTTACAGTGGACTGTATTGGACTGGATTGGATTTGACAATAGAGGACTGGATGGGACTGGATTGCATTGGACTATACTCGAAaaaactggactggactaggcTGGGAGAGATTTGAATTCATTAAGAAATGATTAGAATCAAGACAATCAAATCAACTGACAGCTGACAATCACTGCAACTGACGGATCAAATTCTTAGAGcaaatggatggatagataggtagatagatatagatgtactgtaatttatattattgcAATTTTTTCTGCAGCTACAAAGTCTATTTTTCCAGTGtggagtctgtgtctgtgacagCTATGAAGAAATGAGCTATCAATTATATgtcttattatgattattattatgtacagtCCAGTCAGGGACTCTGCAGCCGTCCTGTCTAGTCCAGTGTCCCTTACCCACTGTACTGTGAGCGCTTCTCAATTAAAGTGTGCTATCAAGCAATCTGCACCACCCACATGTCTGCTGTGCTCAGTGGAGTGTCCATCTCTGTTCCCCTGTCTCCTCTTACCCCCGTCTCTGtccttcttctctccctccctctgtctgtctgtctgtcggtcCCCcatctctgtccccctctctcctgtTTGTCCTTCTCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93190 lncRNA downstream 14318 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA downstream 24053 40128921 ~ 40129366 (-) True G74633
TU93173 lncRNA downstream 110129 40043007 ~ 40043290 (-) True G74611
TU93149 lncRNA downstream 141338 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA downstream 141338 40011069 ~ 40012081 (-) False G74593
TU93315 lncRNA upstream 136512 40296861 ~ 40299179 (-) True G74725
TU93327 lncRNA upstream 177715 40338064 ~ 40340395 (-) True G74736
TU93328 lncRNA upstream 177715 40338064 ~ 40360225 (-) False G74736
TU93330 lncRNA upstream 205611 40365960 ~ 40368045 (-) True G74738
TU93465 lncRNA upstream 275091 40435440 ~ 40435670 (-) True G74845
AMCG00014935 mRNA downstream 45754 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014930 mRNA downstream 114094 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014927 mRNA downstream 192423 39958825 ~ 39960996 (-) True AMCG00014927
AMCG00014924 mRNA downstream 331330 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 388779 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014934 mRNA upstream 2037 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 74709 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014946 mRNA upstream 120845 40281194 ~ 40292569 (-) True AMCG00014946
AMCG00014945 mRNA upstream 148538 40308887 ~ 40315938 (-) True AMCG00014945
AMCG00014944 mRNA upstream 187873 40348222 ~ 40359702 (-) True AMCG00014944
TU93148 other downstream 141338 39934893 ~ 40012081 (-) True G74593
TU93152 other downstream 141338 39984694 ~ 40012081 (-) False G74593
TU93111 other downstream 170023 39901470 ~ 39983396 (-) True G74569
TU93146 other downstream 202349 39944730 ~ 39951070 (-) True G74591
TU92969 other downstream 514462 39637899 ~ 39638957 (-) True G74477
TU93302 other upstream 76053 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 131807 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 142882 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 241434 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 276990 40437339 ~ 40534709 (-) False AMCG00014949

Expression Profile