RNA id: AMCG00014935


Basic Information

Item Value
RNA id AMCG00014935
length 2649
RNA type mRNA
GC content 0.65
exon number 12
gene id AMCG00014935
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40085776 ~ 40107665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAACAGCAGGGGGAGGAGTCCTGGCAGGCTCTTCTGGGCCCTGCTGCTGTCTGGGTGTTGGCTCTTGGGGGGACCATGTGGGGCTGAGGCATCCCAAGGGAGTGCAGGACGAGGAGAACAAGAatgggaggagaaggaggagggaggCAGCAGAAATGGAGCAGTGTTTGTCTCTTCCAGGCAAGCCACCCACCGACTGAATATCTCGGACAAGGATTTAGACCAAGATGTTTCCGCTATTGCTATCGCTACTGCTACGTCTAGGAGGGAGCCAGCAGAGCCCTCTGCTCTGTCCCCCCAGAGTCCAGGCAGGCAGGTAAGAGCAGCTGAGCCATCGCCTGCCCTGCCTATGGACATCCTGGCCACAGGGGGGCAGCACCCAAAGCATGCTGGGGTCCTCCCAGTTCAGGGTGGGAAGGTGGCAGAGCTGGGGAAAGGTGACGAGAAGCCACCATCTGGCCCGGCAGGGAAGGGGCTGAGCAGGGGCAGGAAGAAGGTAAAGGGGAAAATGAGGGGACTGCTAGGTAAGAAGCAGGGCAAGAAGAATGGAAAGGTGGGCAGGAGGTGGAAGGGTGCGAAAGGCCCGCCCCTCAGCCCCTCCCACACGCATGCTTTCTGCAGGGGGGGTCAGAGGGGACGTTGTCCCTGGGTCTGTGaacagagggaaagagggaagaAGGAATTGAGGGGAAACCATAGAGGAAAGACGAGGAATGGCGAGAGGCCGGGCCCCAGGAGACCAGCGGGCGAGAGGCCGGGCCCCAGGAGACCAGCGGGCGAGAGGCCGGGCCCCAAGAGGCCAGGCCCCAGGAGACCAGGGGGCAGGAGACCAGGGGGCGAGAGGCCGGGCCCCAGGAGACCAGGGGGCGAGAGGCTGGGCACCAAGAGGCCGGGGCCCAGGCGACATGGGGGCAGGAGACCAGCGGGTGAGAGGCCGGGCACCAAGAGGCCGGGCCCCAGGAGACCAGCGGGCGAGAGGCCGGGCCCCAGGGGACCAGCGGGCAGGAGCCCAGCGGGCGAGAAGCCGGGCCCCAGGAGACCAGGGAGGCCAGGGGGCGGGAGGCCGGGCCCCAGGAGGCCGGGCCCCAGGAGACCAGGGGGCGAGAGGCTGGGCCCCAGGAGACCTGTGGGCATAAAACCGGGCCCCAGGAGACCAGGAGTGTgtgaggagagggaggtggtGCTGGGGCAGTATGTCCCCAGCCCAGAAGGAGATCCTGATCCCACAGTGGGTTTTGCTGCTTTTCCAGGCTGCAGTGTCCCTCCAGCGCAGCAGGTGGCATGTGGCTCTGGGCGGCTCAGTGTGCGGGGATGCACAGCCAGGGGCTGCTGCCCAGGACCCCCCCGCAACAGGAGCTGCTACTACCCTATGAACGCCTGCACTAAGGATGGTCACTTTGTGTTCTCTGTGTTCCGTGACTCGGTTGCCCCGGCGATTGACCTGCGGTCTCTGCGAGCGGGGGGGCACTGCCAGCCCTCCCTGGTGGCGCCTGACCTTGTGGTGTTCAAGTTCAGACTGGAGTCCTGTGGAGCTAAAGTCACTgagCTGGGGGAGGAGAGGCACTACGTTGCCACGGTGACGGGAAGCGTTCCGATGGTGGTGGGCCGCTATGGGAAGATCGCCAGAGTGTCCCCCTACAGGTTGCGTGTTCAGTGTGCCTACACCCCTGGCTCTACCGCCTCGGTGGGCTACTTCGTCCATAAGTGCTACAGCCGCTACTATGACGATGCTGCCCTGCCCCTGCGCCTCAGCCTGAAGAGCCCCCTGTACCTGGAGGTGCGCCTGGTGGCCCCCCCCGACCCCAGCCTGGTGCTGCTGGTGCACTACTGCCTGGCCTACCCCTCCTCTGCGCAGGCAGCCTGGGTCCTGCTGTACGACGGCTGTCCGAACCCCCAtgacccctccccctccagaCTGGTGAACCCAGGCCGCTCGGGGCAGCAGCGCCGCTTCTCCGTCCAGACATTCCAGTTCATCAATCCACAGTCCGGCAAGTACTGGGACCAGGAGATCTACGTGCTGTGCTCCACTGAAGTGTGCTCCCCGAAGGAGAGAGAGTGCACAGAGAAGTGCTACAGCCCCACAGGGCCCCCTGTGAGACCAACCCCAGTGTCAGCCGTGACCAGCGAGGGTCAGCAGACTGTGCTGCAGGGTCCCTTCTTGCTTCCTGCTGCCCCCAGCACTGAGCTGCAACAGACTGCAGGTGCCAGACCAGAGGCCCCCAAGGAGGCAGCCGGAGGGCGAGGGCCCAAGCAAGGTGCCGGGGAAGAGGCCCCCAAGGAGGCAGCCGGAGGGCAAGGGCCCGAGGAAGGTGCCAGGGAAGAGGCCCGGCAAGGCGCCGGGGAAGAGGCCACCAAGAAAGCATCCGTAGGGTCCCAGGAAGGTGCCGGGGACGAGGCCACCAAGAAAGCATCCGCAGGAGCAGGGTCCAAGCAAAGTCCCGGGGAAGAGGCCACCAAGAAAGCATCCGAAGGTTCCAAGCAAGGTGCCGGTGAAGAGGCCCGGCAAGGCGCCAGGGAAGAGGCCACCAAGAAAGCATCCGCAGGGGCAGGGTCCCAGCAAGGTGCCGGAGAAGAGGCCACCAAGAAAGCATCAGCAGGGGCATGGTCCAAGCAAGGTGCCGGGGAAGAGGCCTGGCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93173 lncRNA downstream 42486 40043007 ~ 40043290 (-) True G74611
TU93149 lncRNA downstream 73695 40011069 ~ 40012081 (-) False G74593
TU93150 lncRNA downstream 73695 40011069 ~ 40012081 (-) False G74593
TU93153 lncRNA downstream 73695 40011069 ~ 40012081 (-) False G74593
TU93159 lncRNA downstream 80709 39962930 ~ 40005067 (-) False G74597
TU93199 lncRNA upstream 21256 40128921 ~ 40129366 (-) True G74633
TU93315 lncRNA upstream 189196 40296861 ~ 40299179 (-) True G74725
TU93327 lncRNA upstream 230399 40338064 ~ 40340395 (-) True G74736
TU93328 lncRNA upstream 230399 40338064 ~ 40360225 (-) False G74736
TU93330 lncRNA upstream 258295 40365960 ~ 40368045 (-) True G74738
AMCG00014930 mRNA downstream 46451 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014927 mRNA downstream 124780 39958825 ~ 39960996 (-) True AMCG00014927
AMCG00014924 mRNA downstream 263687 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014920 mRNA downstream 321136 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014916 mRNA downstream 428214 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014933 mRNA upstream 45754 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014934 mRNA upstream 54721 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014938 mRNA upstream 127393 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014946 mRNA upstream 173529 40281194 ~ 40292569 (-) True AMCG00014946
AMCG00014945 mRNA upstream 201222 40308887 ~ 40315938 (-) True AMCG00014945
TU93148 other downstream 73695 39934893 ~ 40012081 (-) True G74593
TU93152 other downstream 73695 39984694 ~ 40012081 (-) False G74593
TU93111 other downstream 102380 39901470 ~ 39983396 (-) True G74569
TU93146 other downstream 134706 39944730 ~ 39951070 (-) True G74591
TU92969 other downstream 446819 39637899 ~ 39638957 (-) True G74477
TU93302 other upstream 128737 40236402 ~ 40236795 (-) False AMCG00014938
TU93314 other upstream 184491 40292156 ~ 40294526 (-) False AMCG00014946
TU93316 other upstream 195566 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 294118 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 329674 40437339 ~ 40534709 (-) False AMCG00014949

Expression Profile