RNA id: AMCG00014939



Basic Information


Item Value
RNA id AMCG00014939
length 570
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00014939
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40210828 ~ 40211397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGGCGAGGGGGCCCGCCTGGATGACCCCAACAGAGGGCGCCACCAGACCACGAGGTCCCAGAGAAGCGGAAATGCCGGGACCCACTATGATGACCACAACGGAGTGCGCTGCCGGGCCGTGGGACAGAGACGATCAGCGATGCTGAGACCCGCCCCGACGACCGCAGCAGAGGGCTCCACCAGGCCGAGAGAAGGTGCAAGGATCCGGTTGGTGCGTTATGACGGGTCGGTGGACTGGGAGACTTACCAGGTCCAATTCCAGCTGGCAGCATGGTCTGGACAATGGACCCCAGAAGAGAAGGCCGGACAGCTAGCCATGGCACTAGATGGCAGAGCTCGACAGGCCCTCTTGGACGTGCCAGAAGAGCAGCGACAAGACTTCGGGGCCCTCGTCGCAGTTCTACAACAGCGATTCAGAGCCGGGGATCGAGCTAGCGCCTGGCTTGAGAAGCTGACTACATTGAAAAGGAAGCTGGGAGAGAAGCTGGGTCCTTTAGCCGCGGACGCACGATACATGGTGCTCCACCGCTATGTGGGGCTGGCAGTGCCCACCATACTCGATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93177 lncRNA upstream 72569 40101893 ~ 40138259 (+) True G74615
TU93093 lncRNA upstream 204174 39987502 ~ 40006654 (+) True G74557
TU93030 lncRNA upstream 370210 39796112 ~ 39840618 (+) True G74521
TU93025 lncRNA upstream 455164 39755390 ~ 39755664 (+) True G74516
TU93022 lncRNA upstream 458277 39752197 ~ 39752551 (+) True G74513
TU93222 lncRNA downstream 20220 40231617 ~ 40231881 (+) True G74647
TU93224 lncRNA downstream 21377 40232774 ~ 40233420 (+) True G74649
TU93234 lncRNA downstream 73504 40284901 ~ 40286138 (+) True G74656
TU93239 lncRNA downstream 91835 40303232 ~ 40379753 (+) True G74661
TU93251 lncRNA downstream 126818 40338215 ~ 40404638 (+) False AMCG00014940
AMCG00014936 mRNA upstream 4029 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014932 mRNA upstream 59321 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014931 mRNA upstream 70419 40114128 ~ 40140409 (+) True AMCG00014931
AMCG00014929 mRNA upstream 220342 39985305 ~ 39990486 (+) True AMCG00014929
AMCG00014928 mRNA upstream 237758 39970263 ~ 39973070 (+) False AMCG00014928
AMCG00014937 mRNA downstream 9075 40220472 ~ 40224003 (+) True AMCG00014937
AMCG00014943 mRNA downstream 113425 40324822 ~ 40330925 (+) True AMCG00014943
AMCG00014940 mRNA downstream 126845 40338242 ~ 40340289 (+) True AMCG00014940
AMCG00014942 mRNA downstream 159996 40371393 ~ 40373870 (+) False AMCG00014942
AMCG00014941 mRNA downstream 170885 40382282 ~ 40385629 (+) True AMCG00014941
TU93215 other upstream 46831 40162016 ~ 40163997 (+) True G74643
TU93214 other upstream 50250 40159901 ~ 40160578 (+) True G74642
TU93084 other upstream 238417 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 257571 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 335400 39873140 ~ 39875428 (+) True AMCG00014923
TU93243 other downstream 120590 40331987 ~ 40373863 (+) False AMCG00014942
TU93250 other downstream 126818 40338215 ~ 40340395 (+) False AMCG00014940
TU93241 other downstream 157740 40369137 ~ 40373863 (+) True AMCG00014942
TU93363 other downstream 283514 40494911 ~ 40530521 (+) False AMCG00014954
TU93411 other downstream 678577 40889974 ~ 40990904 (+) True G74803

Expression Profile