RNA id: TU93243


Basic Information

Item Value
RNA id TU93243
length 2344
RNA type TUCP
GC content 0.48
exon number 7
gene id AMCG00014942
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40331987 ~ 40373870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacattaacacactgacagacactcaCAAACTCACTGTGTTAAACGTGAGCAGTTAAATAAGATTTATAACTCAccccacactgacactcacacacacacattgaaatcacGAGAACCCGGCCTTAATGACTTCTTTGCaaatattctttatttcactGATACAAAAAGCACCCAATCTACGCAAATGCGAGTCTGTCTACACAACCCACAACTCAGTCCTCTCCCCTTGTGATTACAACACCAGGCAGccagacaaacagaaaatacaaaatacacaacaacGATAATGATGATAACAACACTGATAACCTCAATACATTTCccatataattaattacaattgttGCCCTGGTGACCAACAACACTGAACAGACAAGGGAAAATATGcgtgtggttttatttgttgattcgttcattattattattttatttatatatttatatgatatcttaaaatacacagaaaagcCAGACTGAACATCTACTAATATGATCAACTTGGACCATCCAGTTAGAATATGGAAGCGAAGAAGAAATATGGAGCTACCCCCCTacacccctccctctccctctccctctctctcgctctcgctctcactttctctctctctctgtgcctcacTCTGCCCcaccaaataaaaagtaaataagaaGTATTAAACCCACACAACAGACTGGGTACAGTTCCAGTAACAGGGGCCCACAAACATAAACCCAACCGGACACAGAGGAGACGTCTGTCGCTGAAACAACACAGTACTCTGTACAAGATctgcccctccctcccCCCGCTGAAGCGCAGGGCGGGGCCCGGGTCCACGGCAGTAACATTTCAGCTCATGGTTTAACTTTCAGAGTAAGGGTGTGTACGTTGGTTTACTTCTGCTATTAAAGACGCATCGTTGGGTTGTTTATCTGTAGCATGTGATATCCTAAACCCTATCTTTAAGATATTTCGTTTTGCagaataaagtttaaaatgttggcTGTGGTGCAGTCTGGgaaatatatgcaaattacattattacGCATTCTCTATAGGAGAGTCCATAAAAGAAGGGAACAttaaataaggtggtgtgaccGGGAAAAGACCATCTGAACAACAGGAAACATCTGGGGGAGGACCAATGTTTCTGACAGCAATCTtattccatgtgtgtgtgtgtgtggatactgcacattacagtatataaaacTAAGACGTTACTGCACGCTAATGCTGCACTGATCCAACTTCCCCAAATCATAAAAGCTCATCTGATTAATAATGTTGTTCTGTTTGCAGGAGTGAGTGGCAGCTTACACGACACAACTCCTTCCGAAATACAGACcgcaaaataaaatcaaagccTTCCTCAGATTAGAAATTCATCGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTGTGGTGTGGTGCTGTATTGTTGTGGTGCGGTgcggtgtggtgtggtgtggtgctgTATtgttgtggtgtggtgtggtgtggtgctgTATTgttgtggtgcagtgtggtgtggtgcTGTATTGTTGTGGTGCGtgtgtgtctgcGCTGTTCTCAGACTGTGGGGCTGTGGAGTCAGTTGAGCTGAGGGAGCGGCCCGGCCCACAGGAGCACACAGAACCAGAGCTGAGCCAGTACTTCAGAACACCCAGGAGAGAGggcttcAGTGTGGCCTATGTCGTGTTTAAGAAGGCTTCCTCTGTCGCTGCCGCCAAGAAGCTGAGTCCTGCCACGCCATTGGTCCTCTCCACTGAGCAGCAGCCAATCAGGACGGGGATtcagaaGTGGGCTGACCAGTACAGCGCCGCCCTGGTGGACACACGGCAGCTGCAGGCTGCAGTGGACGCCTACATGCTGGAGCACGACCGGAGGAAAGAGGAGGCGGCGCAGCGCGAGGCGGAGGCTGAAGGGGCGGACGGCGAGGGTTGGGTCAAGGTGTCCCGGCGCGGCCACACTGCCTCCCGCCCCCACAGCGAGCCGGCCAATCACAGAGCGCTGGAGcgggagaagaggaagagagcgAGGAAGGAGCTCATGAACTTCTACACCTGGCAGCACAGAGAGACGCAGAGGGAGCACATTGCCGAGCTGCGTAGGAAGTTTGAGGAGGACAAGCAGCGCATCGCCGTATTGAGAGCCCAGAGGAAATTCAGACCCTACTGACACCCTCCCCTCTGTTTCCACTACACCTCCTCTCCCTCGCTCCAGGACAGTTCACACCTCCACTTgtttatcagtttattttgtattttttcttttacaacaaaataaaaactcaacaGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93234 lncRNA upstream 45849 40284901 ~ 40286138 (+) True G74656
TU93224 lncRNA upstream 98567 40232774 ~ 40233420 (+) True G74649
TU93222 lncRNA upstream 100106 40231617 ~ 40231881 (+) True G74647
TU93177 lncRNA upstream 193728 40101893 ~ 40138259 (+) True G74615
TU93093 lncRNA upstream 325333 39987502 ~ 40006654 (+) True G74557
TU93269 lncRNA downstream 22435 40396298 ~ 40397074 (+) True G74683
TU93276 lncRNA downstream 37018 40410881 ~ 40413637 (+) True G74690
TU93372 lncRNA downstream 115338 40489201 ~ 40491346 (+) True G74768
TU93374 lncRNA downstream 155851 40529714 ~ 40530310 (+) True G74769
TU93383 lncRNA downstream 272318 40646181 ~ 40646393 (+) True G74778
AMCG00014943 mRNA upstream 1062 40324822 ~ 40330925 (+) True AMCG00014943
AMCG00014937 mRNA upstream 107984 40220472 ~ 40224003 (+) True AMCG00014937
AMCG00014939 mRNA upstream 120590 40210828 ~ 40211397 (+) True AMCG00014939
AMCG00014936 mRNA upstream 125188 40188709 ~ 40206799 (+) True AMCG00014936
AMCG00014932 mRNA upstream 180480 40147423 ~ 40151507 (+) True AMCG00014932
AMCG00014941 mRNA downstream 8419 40382282 ~ 40385629 (+) True AMCG00014941
AMCG00014947 mRNA downstream 14043 40387906 ~ 40391206 (+) True AMCG00014947
AMCG00014948 mRNA downstream 45711 40419574 ~ 40437283 (+) True AMCG00014948
AMCG00014954 mRNA downstream 156529 40530392 ~ 40532273 (+) True AMCG00014954
AMCG00014956 mRNA downstream 353939 40727802 ~ 40729957 (+) True AMCG00014956
TU93215 other upstream 167990 40162016 ~ 40163997 (+) True G74643
TU93214 other upstream 171409 40159901 ~ 40160578 (+) True G74642
TU93084 other upstream 359576 39963768 ~ 39972411 (+) True AMCG00014928
TU93074 other upstream 378730 39951188 ~ 39953257 (+) False AMCG00014925
TU93040 other upstream 456559 39873140 ~ 39875428 (+) True AMCG00014923
TU93363 other downstream 121048 40494911 ~ 40530521 (+) False AMCG00014954
TU93411 other downstream 516111 40889974 ~ 40990904 (+) True G74803
TU93556 other downstream 715912 41089775 ~ 41090612 (+) True G74925
TU93587 other downstream 840087 41213950 ~ 41215242 (+) True G74952
TU93640 other downstream 960680 41334543 ~ 41335049 (+) False AMCG00014963

Expression Profile