RNA id: AMCG00014944


Basic Information

Item Value
RNA id AMCG00014944
length 2383
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00014944
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40348222 ~ 40359702 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccaggcaggATGTCCGAGATCGTTCCCCCGGAGGTGCGGCCCAAACCGGTCGTCCCGGCCAAGCCGTCCAGTGTGGGGGGAGCCGCCCTAGGGCTGGGGTCAGGGCCGGGGTCGCAGGGCTCGGGGCTGCTGGGATACGTGGGCATCGACACCATCATAGAGCAGATGCGAAGGAAGACCATGAAGACTGGCTTTGACTTTAACATCATGGTGGTtggtCACAGTGGGCTGGGCAAGTCCACCCTGGTCAACACGCTGTTTAAGTCCCAGGTGAGCCGCAGAGGGATGGGCTGGAGCCGAGAGGACAAGATCCCCCGCACTGTGGAGATCAGATCTGTGTCTCATGTGATCGAGGAGGGGGGGGTGAAGATGAAGCTGACAGTGATCGACACCCCTGGCTTCGGAGACCAGATCAACAACGACAACTGttgGGAGCCCATCAGCCAGTATGTGAGCGAGCAGTATGAGAAGTTTCTGCGGGAGGAGGTGAACATCGCACGCAAGAAGCGCATCCCCGACACGCGTGTGCACTGCTGCCTGTACTTCATCTCCCCCACTGGCCACTCTCTGCGGCCGCTGGACATGGAGTTCATGCGCCACCTGAGTCGAGTCGTCAACATCATCCCGGTCATCGCCAAGGCCGACACGCTGACCCCTGAGGAGAAGAGCGAATTCaaacagagagTGCGTAAGGAGCTGGATGGAGCTGGGATTGAGTTCTATCCCCAGAAGGAGTTTGATGATGATCTGGAGGACAAGACAGAGAATGACAAGATCAGGgAGCTGATGCCCTTCGCAGTGGTGGGCAGTGACAAGGAGTACCAGGTTAATGGGAAGAGAGTTCTGGGCAGGAAGACCCCCTGGGGAGTAGTGGAGGttgaGAACCCCGGTCACTGTGAATTCGCTCAGCTACGGGATTTCCTCATCAGgTCTCACCTGCAGGACCTGAAGGAGGTGACCCACAATATCCACTACGAGTCGTACCGCGCCAAGAGGCTCAACGACAACGGCggcctgccccccccctccgGCAACCCCCCCGACTCCGAGGACACTCATGACAGCAACCTGTGACACGCGTGCGCTGAGACAtgcactcactgacacacacacacactgagacttGCACAACACGTCCAATCAATCACATGaaatcagatcaaatcaaaGTTGAGTTGACTCTTCATCAGCTCAGAGCACATCCAATCACTTCCAGTCCAATCACGAAATCATATCCAATCAGCCCCAATTAATCAGGTCCCGAACATATCGCACACAACAATCAAATCAGATGACATGAAATCAGACCAAATCAGATCAGGTAATTTGAAATCAGATTCAATCGACTCAAAGCTCTTCCAATCACAGCACATCAATCCCCGATATGAGATCCAGTGAAATCGGAGAACTGAAACTCCACAGTTATACAACTCAcgcactctctcactcacacacacacacacatacaacttAATGCAATAACTAaaccacaaacaacacaaaacatacataaacaaaccaacCGTACATTAAAGATGTCTGTTAAGTGACATATCTTTGAACTGATTAATTGGATTAACTGGAAACCAACCTACACTGACCATCTCTGTGGAatgagcagagagagacagatgaaaagtgagaggaggggagagagagagagagagagagagagagtgagaggggaggaggaggaggaggagctggggACGGCACTGTGTTGTCCTGTAATGGCCAGTGTGGCTGTGTATGGGCTCTGGTGTAAATCCATACGGGATTCACAGCAGAGCTCTGTTTGTCCGTGCCGAGGTGCCGGAGCTCACTATGCGGCTGTGACATGAGCGACTGATTTGAGTTGTTGTCTTCACCGTTACTGTCTCCACACGGGCTCTGTTGGAGAGGTGGGATCTGGGGAACGCAGTGCAGGGGCGGGGCGGGGTTACAGCGGGAGCGGCCCAGGATGCTCCTCTGACGTTGTGCCAACACTGGCTTGTGTTTATGAATCCACTCatctcatttttttaaatctatattgttgttgttgttattgttactgttttattgtttcactTTACTTAAAAGACAGAGtcatgacagacagacaagcagacacagacactgacagagaCAGATACACTCACACAAACGTAAGGAGAacagcacagagacagacacacacacaatctcacgcactcacactgacagacagacagacagacagagagctgTAATTACTGAGCTAAAATGATCATAAGCCATTTTAATTAGGGCAgttttattgttaattgtaCACTGTGTCCAAGTGATTtcactgtgtgagtgtgtgagtgtcagtgagtgtgtgtcagtgagtgtgtgtgagtgtcagtgaatgtgtgtcag

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16938 SEPT3_9_12; septin 3/9/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93327 lncRNA downstream 7827 40338064 ~ 40340395 (-) True G74736
TU93315 lncRNA downstream 49043 40296861 ~ 40299179 (-) True G74725
TU93190 lncRNA downstream 209121 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA downstream 218856 40128921 ~ 40129366 (-) True G74633
TU93173 lncRNA downstream 304932 40043007 ~ 40043290 (-) True G74611
TU93330 lncRNA upstream 6258 40365960 ~ 40368045 (-) True G74738
TU93465 lncRNA upstream 75738 40435440 ~ 40435670 (-) True G74845
TU93475 lncRNA upstream 286480 40646182 ~ 40646384 (-) True G74854
TU93481 lncRNA upstream 336285 40695987 ~ 40696241 (-) True G74860
TU93485 lncRNA upstream 344209 40703911 ~ 40704607 (-) True G74864
AMCG00014945 mRNA downstream 32284 40308887 ~ 40315938 (-) True AMCG00014945
AMCG00014946 mRNA downstream 55653 40281194 ~ 40292569 (-) True AMCG00014946
AMCG00014938 mRNA downstream 79737 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014934 mRNA downstream 183642 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014933 mRNA downstream 187873 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014952 mRNA upstream 34801 40394503 ~ 40398556 (-) True AMCG00014952
AMCG00014951 mRNA upstream 43064 40402766 ~ 40410777 (-) True AMCG00014951
AMCG00014953 mRNA upstream 51172 40410874 ~ 40416728 (-) True AMCG00014953
AMCG00014950 mRNA upstream 69680 40429382 ~ 40431042 (-) True AMCG00014950
AMCG00014949 mRNA upstream 77557 40437259 ~ 40438149 (-) True AMCG00014949
TU93316 other downstream 44137 40303231 ~ 40304085 (-) True G74726
TU93314 other downstream 53696 40292156 ~ 40294526 (-) False AMCG00014946
TU93302 other downstream 111427 40236402 ~ 40236795 (-) False AMCG00014938
TU93152 other downstream 336141 39984694 ~ 40012081 (-) False G74593
TU93146 other downstream 397152 39944730 ~ 39951070 (-) True G74591
TU93349 other upstream 42081 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 77637 40437339 ~ 40534709 (-) False AMCG00014949
TU93483 other upstream 338151 40697853 ~ 40698276 (-) True G74862
TU93491 other upstream 423138 40782840 ~ 40783230 (-) True G74870
TU93508 other upstream 546679 40906381 ~ 40909386 (-) False AMCG00014958

Expression Profile