RNA id: AMCG00014946


Basic Information

Item Value
RNA id AMCG00014946
length 3783
RNA type mRNA
GC content 0.67
exon number 7
gene id AMCG00014946
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40281194 ~ 40294526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCTGACCCGCTCAGCAGtccggggggaggggggggcggtGGCAGTGGCGGTGGCGGCACCTCAGCCCAGAATTCCCTCGCTCCTCCAtgttcttcctcttcttcctcggAACGCCGGCTATTTCCACAgtcaggagggagggggagggccaGGGTCCTCTGGGTTTGTGGCAGAGACAGGAGTGGGAGGGATGGGTAGTTATAAAATGAGCCCCCACCAGCACCCTTCCCAGCTTGCCCACCCCCATGCCAAATCTCACCattacccccaccccctcagcCCCCTCTCCCTGGAGCAGGACTGGCCCGGtcgcccccccacccacaaGGAGGCGGCACTGATGTCACCGGGCTCGGGGGGGCAGCGTGcccacccccatccccacagcaacaacaccaacaaccaccaccaccaccaccacccccatgccctccctctccctcaggcCATGCGCTCACACCAGTCCACCCTGCTCCTCTCCCCCGGCTCCCAGTCGCCCCAGCTGCCCCCGCCGGCCCAGCAGGGCGGCTACTACGATGTTCTGAAACGCTGGCCCCTCGCtggcagagagggggagggcgaGGGCCGGAGGCAGCGGCACAGCCAAACGGCCTCTGCAACCCTGCCCCCGCCTCCgccacccccccctcctcagCCCTCCAAACCTGATACACAGCCCCCAGCTCCCTCCCCATCATCCTCATCCgcttcctccccctcctcttcctcctcctcctcctcttccaggGGGACTAAGATCCTGCCCCCCAGGAAAGCTCGGGGGCTGAAGCTGGAGGCCATCGTGCAGAAGATCACTTCACCTAACGTCAAGAGGGCCCCCACCCCGGCCAACCACACCGGGGCCTACCCCCCTGCCCTCGAGGAGGGCCCACACGCAGCCGAGGGCCCAGGGCCGGTGGGGCAGTACCCGCGGCTAGGGGGTGGCGGGGAGCTAAGTGGGGTGGGGAGCCTGGGACTCTCCTTCCTGGGGGAGGGTCTCTCCCTGGACGAAATCATGGCCTACAGAGGGGCTGAGGACACCGGACCCCCTCCCCCATCCGCGGTACCCTACCCCTGCGATCAGCCCGGTGGGGAGGGAACCAGGAGAGCCGGGCCGCAAATGAGGGAGCGGGGAGCAGagggggaagaggaagagggcGGTGGTGGCAACGATGGCAGGAAAAGGGAACTGGGGGGGCCTGATCTGACGCTGCTTGGGCCCTTACCGCCCCCCCAGCCCCGCCCTGCGCCACCACTGCCCCTCCACCACCCGCTCTCTTCCTCCCCATCCTCCGCGCTCTCCGACATCCAGAGGTTTGCCAACACCTACCAGCAGCTGGAGCCCCGGCGCGGTGGAGTGGGACGGGCAGGCCCAGACTCCGGAGACCAGTCCGCAGCCACCCTTCTCAGGCAGAAGCTGCAGGAAAGCGGGGGGCTCGGGCTGGGCCTGGACGACTACCCTGGGGGGTTGGACTTCGGTTCTGTTCGTGGCCAGAACCAGCACCAGACCCTCTGTGGCGCTccgccacccccccacccccagaccAACCCCAACATGAACCATAACACCAAGCCTGGAGAGAACGTCGTCCCCAAAGGTTACTTCCCCTCGGGCAAAAAGAAGGGCCGTCCTGTGGGCAGTGTCAACAAGCAGAAGAGAGCCCAGAACCAGGGCCAGGGCGCACCagtctcctcttcctcctcctgctcttcctcttcctcttcctcctcccctgCATTCCTGGCACCCCAGACCAGCTTGGCAAACAACCGGGGTGTCCAACGTAGCGGCAGGGATCCAGTGGAGGAGAATCTGTGCAGGGAAGCGACCAGCATCGCCGCTCCCACCGCCCCCACCACTCCCACTGCCCCTGCCACCCCCACCGCCCCAGCCCCCGGTCCCGGGACTCCTGCCGCTGCTGAGACACCAGCGCCACACAGCCAGCTGCCCCCCCAGTGTCAACCGGGAGAGGGCGGTCATGACCACAATGACGGAAACGACGATCGCGACTGCAAACCGCGCCGGCAGAGACAGAGGCGCAGGaagggtgggggaggggaaggCACTGAGGGAGAAGGAACGGCGAGGGCAGGAGGGAGGCAGAGAAGGAGACGCCGGGGGAGAGGAGATGCTGAAGGAGGGGACGGGGGGACGTTCTCCGAGAGAGACCTAGAGGACAGGAAGACCGAAGAGGGAGCTGTGGGGGGAGtggcagggggagggggagggggctgggcGTGGGCCGGCCCGTTCAAGTCCAGTTTCTCGCCCTACATCCACGTGGAGAAGCAGGTCCAAGAGCTGGGCGCAGTCTGCACCATCATCAACGCCATGGGTGAGGGCCACCGCGGGAAGAGCGCGGCGGGGGGAGAGGTGGCTGGGCCGGGGCAGGGGATGTCGACACAGCCGCCTGCAATGCTTTCCAGGCGCGACCGGGAACGGGACAGGGAGGGCTGCTCTGCCAAGGGAGCCTCCCTCGAGTCGGCCGCCGCCTCCGTCTCCTCCGCTGCCGTCCACTCCAGTCCCACGGCCAAAGCCCTGCCCTCCTCTGGCTACCTCCTCCCGGGACCCCCCGTCACAGACTCCGGGGTCTTGGGCCGGCTGCTGTGCTGCCTGTGCAAGAAGTGGGCCAATTACAAAACCCTGGGGGACCTTTTCGGGCCCTACTACCCCCCCCAGTACGCTGCCAGCCTCCCCAAGCACCCCCCACCAGCCAGGCAGGGGCAGGGCCAGCCCCGTGTCAGAGGCACCGgaccaggagagggagcagaggCCGGGGGGGCCGTGATCAAAGTGGAAGTGGAAGCCGCGCCCATTGTCACGCCAACGGCTGCTGGTGCAGCAGGGTGGGAGCagcaggagaagaaggaggagaaagaagaggatgaggagagagaggagggtaaGACACCTGCTCTGGCTCTAACTCCCCCCCTCAGTGCTCCACAGCCAGCACTACAGCCACAGCCCCAGCAGCCGCAGCCCTCCGGGGGCAGCAGGACCGAGGCGCACAAGCTGACCTCCCATCCCCGCTTCAAGAGACGCCACCGCTCCAGTGAGGACCCGGGCAACCCCCCGACCGCCCCGGCTGCCCCCGCCACGGAGCCTGAGCCACCCCTGCCCCTGCCCGACCTGCCCCTGGACCCCCAGGAGCTGTGGGTGCACGAGCCGTGTGTGGTGTGGACCAGCGGCGTGTTCCTGGTCAGCGGCCGGCTTTACGGCCTGCAGGAGGCGCTGGAGGGAGCCAGGGAGACGCGCTGCTCTCACTGTGACGACTCGGGCTCCACTCTGGGCTGCTACAGTAAAGGCTGCTCCCTGAGATACCACTATCTGTGTGCCATGGAGGCAGatTGCTCTCTGAATGAAGACAATTTCTCTATACGATGTCCAAAGCACAAGGCTGGCTGCAGTGCACATGGCAATGGAGAGCTGACggagtgggagagaggaggaggaggaggaggaggaggatcgAGGGCAGGACGCGCGGGCCATCACCACACCACGGGGATGGAGCGAGACAACCAGACACCACCAGGCAGGGGCGGCCCAGACGCACGACGGGACACCATTggaagctCCACGGCCGGAGCGACGGAGGCCCAACGCATCTGTGCCTTTATCTTccgcttcttcttcttcttcggcCTGATCCTGTCCGTGCGCTCGTCCTACGCCCTGGGCGGCGTGCTGCCCTGCCCCCTGCTGGTCCACGCTCTCATCTGCCTGCTCATCTTCTTTGCCATCTACCTGATCTACAACTTCCTGTACCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93190 lncRNA downstream 142093 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA downstream 151828 40128921 ~ 40129366 (-) True G74633
TU93173 lncRNA downstream 237904 40043007 ~ 40043290 (-) True G74611
TU93149 lncRNA downstream 269113 40011069 ~ 40012081 (-) False G74593
TU93315 lncRNA upstream 4292 40296861 ~ 40299179 (-) True G74725
TU93327 lncRNA upstream 45495 40338064 ~ 40340395 (-) True G74736
TU93328 lncRNA upstream 45495 40338064 ~ 40360225 (-) False G74736
TU93330 lncRNA upstream 73391 40365960 ~ 40368045 (-) True G74738
TU93465 lncRNA upstream 142871 40435440 ~ 40435670 (-) True G74845
AMCG00014938 mRNA downstream 12709 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014934 mRNA downstream 116614 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014933 mRNA downstream 120845 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014935 mRNA downstream 173529 40085776 ~ 40107665 (-) True AMCG00014935
AMCG00014930 mRNA downstream 241869 40029772 ~ 40039325 (-) True AMCG00014930
AMCG00014945 mRNA upstream 16318 40308887 ~ 40315938 (-) True AMCG00014945
AMCG00014944 mRNA upstream 55653 40348222 ~ 40359702 (-) True AMCG00014944
AMCG00014952 mRNA upstream 101934 40394503 ~ 40398556 (-) True AMCG00014952
AMCG00014951 mRNA upstream 110197 40402766 ~ 40410777 (-) True AMCG00014951
AMCG00014953 mRNA upstream 118305 40410874 ~ 40416728 (-) True AMCG00014953
TU93302 other downstream 44399 40236402 ~ 40236795 (-) False AMCG00014938
TU93148 other downstream 269113 39934893 ~ 40012081 (-) True G74593
TU93152 other downstream 269113 39984694 ~ 40012081 (-) False G74593
TU93111 other downstream 297798 39901470 ~ 39983396 (-) True G74569
TU93146 other downstream 330124 39944730 ~ 39951070 (-) True G74591
TU93316 other upstream 10662 40303231 ~ 40304085 (-) True G74726
TU93349 other upstream 109214 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 144770 40437339 ~ 40534709 (-) False AMCG00014949
TU93483 other upstream 405284 40697853 ~ 40698276 (-) True G74862
TU93491 other upstream 490271 40782840 ~ 40783230 (-) True G74870

Expression Profile