RNA id: TU93466


Basic Information

Item Value
RNA id TU93466
length 676
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00014949
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40437259 ~ 40534709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACACGGGCGGCCAGCGCTGCGTTCCGCGTTGTCAGACCCATCTTTAGCCGGAATTTGGACGAGGCGAAGCCGCGAGTCAGGGAGCTGTACCGGGCTTGGTACCGAGAAGCCCCTAATGCCGTGACAATGTACCAGCTGGACATCTCAGCAAAACAGTGCCGGGAGAAGGTCAGGGAGATGTTTGACAGGAACCGACACGTCAGTGACCCCAGAGTCATCGACATGCTGGTCATCAAGGGGAAGATGGAGCTGCAGGAGACGATTAACGTGTGGAAGCAGAAGACCCACGTGCTGCGCTACTTCCACGAGACAGAGACGCCGCGGCCCAAAGACTTTCTCTCCAAGTTCTACTCTGGTCACGACCCCTAagcccctcccccaccacagactgtaaataaatacatccctGACACTCAACTCTCGCCATCTTGTCAGGTCCTTAGCGACTGCACTGCTGTACCTCCAATAAAATGTCAAGAGTCCTTGGTTTTTGGGGGAATGCTTTTGTGAAAGAGTGAATGAGTGGACGTGACTGGGAGAGAGATCCGCTGTGGTTTCTAATAGTGAATAATTCATTCAATAaatatggaattaaaatagCGTGACTGGGGCTGGATTATAACACTGCAGTTGTACATGGAATAGAGTAGCGGAATGGAATAAAACAGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93465 lncRNA downstream 1669 40435440 ~ 40435670 (-) True G74845
TU93330 lncRNA downstream 69294 40365960 ~ 40368045 (-) True G74738
TU93328 lncRNA downstream 77114 40338064 ~ 40360225 (-) False G74736
TU93327 lncRNA downstream 96944 40338064 ~ 40340395 (-) True G74736
TU93315 lncRNA downstream 138160 40296861 ~ 40299179 (-) True G74725
TU93475 lncRNA upstream 111473 40646182 ~ 40646384 (-) True G74854
TU93481 lncRNA upstream 161278 40695987 ~ 40696241 (-) True G74860
TU93485 lncRNA upstream 169202 40703911 ~ 40704607 (-) True G74864
TU93496 lncRNA upstream 286985 40821694 ~ 40822155 (-) True G74875
TU93502 lncRNA upstream 337054 40871763 ~ 40871994 (-) True G74880
AMCG00014950 mRNA downstream 6297 40429382 ~ 40431042 (-) True AMCG00014950
AMCG00014953 mRNA downstream 20611 40410874 ~ 40416728 (-) True AMCG00014953
AMCG00014951 mRNA downstream 26562 40402766 ~ 40410777 (-) True AMCG00014951
AMCG00014952 mRNA downstream 38783 40394503 ~ 40398556 (-) True AMCG00014952
AMCG00014944 mRNA downstream 77637 40348222 ~ 40359702 (-) True AMCG00014944
AMCG00014957 mRNA upstream 351306 40886015 ~ 40898700 (-) True AMCG00014957
AMCG00014958 mRNA upstream 371516 40906225 ~ 40909451 (-) True AMCG00014958
AMCG00014959 mRNA upstream 377485 40912194 ~ 40922866 (-) True AMCG00014959
AMCG00014962 mRNA upstream 454963 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014967 mRNA upstream 643175 41177884 ~ 41226807 (-) True AMCG00014967
TU93349 other downstream 32011 40401783 ~ 40405328 (-) False AMCG00014951
TU93316 other downstream 133254 40303231 ~ 40304085 (-) True G74726
TU93314 other downstream 142813 40292156 ~ 40294526 (-) False AMCG00014946
TU93302 other downstream 200544 40236402 ~ 40236795 (-) False AMCG00014938
TU93152 other downstream 425258 39984694 ~ 40012081 (-) False G74593
TU93483 other upstream 163144 40697853 ~ 40698276 (-) True G74862
TU93491 other upstream 248131 40782840 ~ 40783230 (-) True G74870
TU93508 other upstream 371672 40906381 ~ 40909386 (-) False AMCG00014958
TU93511 other upstream 388255 40922964 ~ 40925437 (-) True G74887
TU93516 other upstream 397088 40931797 ~ 40933954 (-) True G74890

Expression Profile