RNA id: AMCG00014971


Basic Information

Item Value
RNA id AMCG00014971
length 699
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00014971
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41470294 ~ 41474481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGACACGCTTCCCCGGCACTGAGCGCCCAGGCAGGCCGACACACAGGCGTCCCAGCGGGCTGAACCAGCGGCACCTCCTGTAATATCGCTGTGCAGATTAAGAGACCAGCAGCCAAGCCGGCGTGTCAGTAACCCTCCATGGCCGGAATCGAGAAGCTGTCTCCCGCCTCGGGCCCCGTGGAGACGCGGCCCCCGGAAGACGAGATCGAGGGAgacgaggaggacgaggagCTGGACGAGACGCTGGGCGAGCGCATCTGGGGGCTGACGGAGATGTTCCCCGATGGACTGCGCTCAGCGGCCGGCAAGATGTACAGctTCACCCGCTCAGCGCTGTGGGTCGGAACCACCTCCTTCATGATCCTGGTGCTGCCCGTGGTCTTCGAGACGGAGCGACTGCAGCTTGAGCAGCAGCAACTGCAGCAGCAAAGACAGATCCTGCTGGGACCGAACACAGGGATGTCGGGAGGGATGCCGGGAATGATGCCTCCTGCTCCCGGGAAGATGTGACCCCCTGGAGCTGCGGCTGATCCTGACGGGAGCGAGCGGAACTGggtgtgggggagggagggagacccTGGATCGGCGCACGGGTCCACCACCCCAGCACTGGGATGACTGCTACACCAATTCGGAACAGGAAATGACCAAAACAGCGGGATAATAAAGAGACCTCCCCCCCTTTTCAGCAGACCC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0001889 liver development biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93716 lncRNA downstream 19481 41450090 ~ 41451333 (-) True G75064
TU93685 lncRNA downstream 61202 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 65015 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 200631 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 206907 41262768 ~ 41263907 (-) True G74970
TU93744 lncRNA upstream 78976 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 176855 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 195675 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 291051 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 337852 41812333 ~ 41815261 (-) True G75170
AMCG00014975 mRNA downstream 1262 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014973 mRNA downstream 9951 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014974 mRNA downstream 35186 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014972 mRNA downstream 54803 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014964 mRNA downstream 139044 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014977 mRNA upstream 14408 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014978 mRNA upstream 63805 41538286 ~ 41561967 (-) True AMCG00014978
AMCG00014984 mRNA upstream 200303 41674784 ~ 41687445 (-) True AMCG00014984
AMCG00014985 mRNA upstream 214072 41688553 ~ 41689983 (-) True AMCG00014985
AMCG00014983 mRNA upstream 216396 41690877 ~ 41698688 (-) True AMCG00014983
TU93668 other downstream 139148 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 301263 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 536860 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 545377 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 561428 40906381 ~ 40909386 (-) False AMCG00014958
TU93975 other upstream 644806 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 817440 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1034388 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1049238 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 1325670 42800151 ~ 42803287 (-) True G75497

Expression Profile