Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00014972 |
| length | 890 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 5 |
| gene id | AMCG00014972 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 41413412 ~ 41416011 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0005665 | RNA polymerase II, core complex | cellular_component |
| GO:0005666 | RNA polymerase III complex | cellular_component |
| GO:0005736 | RNA polymerase I complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0001054 | RNA polymerase I activity | molecular_function |
| GO:0001055 | RNA polymerase II activity | molecular_function |
| GO:0001056 | RNA polymerase III activity | molecular_function |
| id | description |
|---|---|
| K03014 | RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU93685 | lncRNA | downstream | 3800 | 41406917 ~ 41409612 (-) | True | G75035 |
| TU93682 | lncRNA | downstream | 7613 | 41405462 ~ 41405799 (-) | True | G75032 |
| TU93617 | lncRNA | downstream | 143229 | 41269927 ~ 41270183 (-) | True | G74978 |
| TU93609 | lncRNA | downstream | 149505 | 41262768 ~ 41263907 (-) | True | G74970 |
| TU93582 | lncRNA | downstream | 202101 | 41211039 ~ 41211311 (-) | True | G74950 |
| TU93716 | lncRNA | upstream | 34079 | 41450090 ~ 41451333 (-) | True | G75064 |
| TU93744 | lncRNA | upstream | 137446 | 41553457 ~ 41554704 (-) | False | AMCG00014978 |
| TU93821 | lncRNA | upstream | 235325 | 41651336 ~ 41673042 (-) | True | G75145 |
| TU93820 | lncRNA | upstream | 254145 | 41670156 ~ 41672310 (-) | True | G75144 |
| TU93838 | lncRNA | upstream | 349521 | 41765532 ~ 41766815 (-) | False | AMCG00014981 |
| AMCG00014964 | mRNA | downstream | 81642 | 41330438 ~ 41331770 (-) | False | AMCG00014964 |
| AMCG00014967 | mRNA | downstream | 186605 | 41177884 ~ 41226807 (-) | True | AMCG00014967 |
| AMCG00014962 | mRNA | downstream | 422621 | 40989672 ~ 40990791 (-) | True | AMCG00014962 |
| AMCG00014959 | mRNA | downstream | 490546 | 40912194 ~ 40922866 (-) | True | AMCG00014959 |
| AMCG00014958 | mRNA | downstream | 503961 | 40906225 ~ 40909451 (-) | True | AMCG00014958 |
| AMCG00014974 | mRNA | upstream | 5850 | 41421861 ~ 41435628 (-) | True | AMCG00014974 |
| AMCG00014973 | mRNA | upstream | 36432 | 41452443 ~ 41460863 (-) | True | AMCG00014973 |
| AMCG00014975 | mRNA | upstream | 47583 | 41463594 ~ 41469552 (-) | True | AMCG00014975 |
| AMCG00014971 | mRNA | upstream | 54803 | 41470814 ~ 41474481 (-) | False | AMCG00014971 |
| AMCG00014977 | mRNA | upstream | 72878 | 41488889 ~ 41515465 (-) | True | AMCG00014977 |
| TU93668 | other | downstream | 81746 | 41329313 ~ 41331666 (-) | True | AMCG00014964 |
| TU93577 | other | downstream | 243861 | 41169041 ~ 41169551 (-) | True | G74945 |
| TU93516 | other | downstream | 479458 | 40931797 ~ 40933954 (-) | True | G74890 |
| TU93511 | other | downstream | 487975 | 40922964 ~ 40925437 (-) | True | G74887 |
| TU93508 | other | downstream | 504026 | 40906381 ~ 40909386 (-) | False | AMCG00014958 |
| TU93726 | other | upstream | 54283 | 41470294 ~ 41472194 (-) | True | AMCG00014971 |
| TU93975 | other | upstream | 703276 | 42119287 ~ 42131232 (-) | True | G75272 |
| TU94096 | other | upstream | 875910 | 42291921 ~ 42292295 (-) | True | G75370 |
| TU94183 | other | upstream | 1092858 | 42508869 ~ 42513574 (-) | False | AMCG00015031 |
| TU94191 | other | upstream | 1107708 | 42523719 ~ 42534278 (-) | False | AMCG00015028 |
