RNA id: AMCG00014973


Basic Information

Item Value
RNA id AMCG00014973
length 5931
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00014973
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41452443 ~ 41460863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACGACGCCGCCATTTTCTCCTAAAGATCGTTGTGGATGAAGGCAGTTAGAGATACGCACAAACTTTCTGGAAAAATAATATCTTTATCGTTTTCGTAAGATTTATTAAGTaaccaacttttttttccctgagattatatttatatatatatagttttgtttctgGTAGCTGGCGCTGAGTGAACATTGACAAATAAGTCGGGCTTGTTTGTGGGCGGAGTGAACAGCCGTGTTGTTCTGTATTGTGCTTGCGTCTCCACCGCGAAACAAGCGGCTGCAGCCCGAGTTCACAGCCGGTTCATTACAGCTCCCGTGTAATTCGTGCGGAGATGCGAGGCGGCTCGTCGTACGGAGACCGGGACCGGGACCGGGACCGCGGCAGAGACCGGGGcCCTCGTTTCGGCTCCAGTCGTGGCGGCCCTCCTCCCACCAAGAAATTCGGCAACCCGGGAGAGCGCCTGCGCAAGAAGAAATGGGATCTGGACGAACTTCCCAAATTCGAGAAGAACTTCTACACGGAGCACCAGGAGGTGGCCCGGATGAGCCAGtatGATCTGGAGGAGTTTCGCCGGAAGAAGGAGATCACCATCCGTGGCACCGGCTGCCCCAAGCCCGTCACCAGCTTCCACCAGGCGCAGTTCCCCCAGTATGTGATGGATGTGCTGATGCAGCAGAACTTCGTGGAGCCCACAGCCATCCAGGCGCAGGGCTTCCCCCTGGCGCTGAGCGGCCGCGACATGGTGGGCATCGCGCAGACTGGCTCTGGGAAGACGCTGTCGTACCTCCTGCCAGCGATTGTGCACATCAACCACCAGCCCTACCTGGAGAGGGGAGACGGGCCCATCTGCCTGGTTTTGGCACCGACCCGGGAGCTGGCCCAGCAAGTGCAGCAGGTGGCGTTTGACTACGGCAAGTCGTCCCGCATCAAGAGCACCTGTATCTACGGGGGGGCACCCAAGGGCCCCCAGATCAGAGACCTGGAGAGAGGCGTGGAGATCTGCATCGCCACCCCGGGCCGTCTGATTGACTTCCTGGAGTCGGGGAAAACCAATTTGCGGCGCTGCACCTACCTGGTGCTGGACGAAGCCGACCGCATGCTGGACATGGGCTTCGAACCACAGATCCGCAAGATCGTCGACCAGATCAGGccgGACCGCCAGACTCTGATGTGGAGCGCCACCTGGCCCAAGGAGGTGCGTCAGCTGGCGGAGGACTTCCTGCGGGACTACGTGCAGATCAATGTGGGCGCCCTGGAGCTCAGCGCCAACCACAACATCCTGCAGATCGTGGACGTGTGCATGGAGAGCGAGAAGGACAACAAGCTGATACAGCTGATGGAGGAGATCATGGCAGAGAAGGAGAACAAGACCATTATCTTTGTGGAGACAAAGAAGCGCTGCGATGACCTGACCAGGAGGATGAGGAGAGACGGGTGGCCGGCGATGTGTATCCACGGAGACAAGAGCCAGCCGGAGCGAGACTGGGTGCTGACAGagTTTCGCAGTGGCAAGGCCCCAATCCTGATTGCGACGGACGTGGCTTCTCGGGGGTTAGTCTCCCTCCCCCCGGCGCTCGGAAGCCGGCATTCACAGGCTTTCGAAGGGGGAAGGGACGGGGGGGATGGGGCGTGCCTGCCGCAGGACCTAGGCATGACTAATCAAGCGCCCAGCCCAGagcggagagggagagaaggccCAGATTTATCGATCCTCAGCCCAGTCCTCCTGTCtcgaggaaaaaaaaaaaaaaaaccaaaccctccaccaccaccacccccacccagGGAACTCGACCTGGGCAGGGGGTAACGGCAGAGAGTAAAGGGGGCTGCTGGGCTGCCAAATTCCAGCTGGGGAGGAAAGGTGGCTGAGCTGGGGAAAAGGGTTTAGGGGGGGCCTGCCTTTtgcggttgttgttttttttcttcctgcctCTTAAAATCTCTAAATGCAGCCGTCCACCCAAGCTGTTGAAGATGCCTGTGTTGCTGGGCAGGGGGGCACCAGGCTGAGGCAGGCAAACCTCTGGGCCCAGCTGTACTGGAGCTGTGAGTCTTCTGGGTCTTTGTGAAGTCTCAAAGGAAGATTTAGTCAACAACATAGctgaactgcactgtgtgtACAGCTTACCAGACCTGGGCAGTGTCAAGGGTTTCTGTCCGTAGACAGGTGTGTAGTGTTACTGGACTTCAGCGCAGTATGTCCTAGGTGTGTCAGTGTAGACGGGTGTGTTGTGATACTGGAGTTaagtacagtgtgttacagatGTCAGTGTAGATGGGTGTGTAGAGTCACTGGAGGGGCCCCCCCATATCACCCTGGGTCCTCAGCCCCCCCGGCtccctcctctgcctcctcctccttttcttctcctcctcctgctcctcccgTGGGCCCAGCCCCTGCGTGCGGGCGTCATGTCTGGTGTCCTGTTTGGCAGTGTCCCGCTCCGGCCAGCGGCTGCTGTGcaaagggaggggggagggggcagccTGGAGCCGCCGTGCCGCGTTCAGCCGCCCAAATGCTTCTGCGCCAACAGACcccagaacagaacagaacgaCAGGTTTCACTGCAGCCCCCACTGCCAAAAGTCATATTCATCTCTGTGCAGCGTGCGTAGATGCTCCAGAAACACAGATACAATATTACCCAGCAGCCCTTACTtccaaaagagagaaaaacatcttGCCTAGCCGCCCCCCCGGTAAATGGAACCAGACAAAAAAAGAACGGTCACTTTACCCATAGTGCACCACTGTGACAGATCACTTGTCtgttttatcatcatcatcaaactCCTCGAGGCAAAAAGCAGTTTCCTCCTGATTTGTCCCTAGCCCCCTTTTCAAGTCTCCACTCAAACAAGCCCCACCACCCGTCTTGTCCCCCCATCCTCGAGCCTGGACACCCATGGTCTGTTTCTTGTTACTGCAGTAGTCGGGAGTTTTCTGGGCTGTGCTGCCTGCTGCGCTCAGGGCGAGGGGCTGCGCTGTCAGCCGCTCCCCCGCTGTCTCCTctgtctcctgtgtgtctgtgttcgAAGACAACGACAAATTGAGAAATCTGTAACACTTGGGTGGAAGCTGCCACCACTACACTGCCAGGCCAGACTCATTGTTTCCTAAATATCCCATCTATAGTTAGAAGaaagaaactatttttttatttttgggagcCTGAGAAAGGTAAGATGTGTTCTCCCCTCCGAGCAagaaatatcattaaaaaatacatatttttgttttcttgtcctgGAAGAAGGAGGTTTTTCTCTAATGGGTCAGacctttttcaaaaataaactatttggaAAGCCACTAGCAGAATCTCGGCCCCCAACACACCCACCCACTCGCTCGACCTCCTCCCTGTTCGGGCAGAAAGGCAAATCTGAGCAAAGatgtaaaaagtacattttaaaaatctatatacaATGCAGGTTCCCTAAACTTAACCGTGGACTTGCCCTAAATTCTTCACTCCCTGGCCTCCAGCAGAGGGAGGCCTGTGTCCCCTCGGGTGTTCAGTGGGGCCTGTAGGTCAGGCAGCCGTGACGCCCTGAGGTAGCGCCAGAAGAGTGCAGATTTATAATTCACcagaccccctccccccaagcCACCCACTTGCCCCATAAGCCccctctggagtctggagaCTGCCCCTTGCTCTTGCTCCTGACCCCCTTGCCCACCCTCCCTCCATCCTTCACTGGCCGGCGCCTGGGCAGAGGTGCTGTCCTGGTCTCTTCCTCCGGGGGGAGACGAGGAGGAGGCCTAAAGACCTGGGACTCGCCTCGTCATGCTGCCCAGGGCACGGAGGGAGACGCTGGGAAGGGAGTGCAGACCCAGTGTGCTGGAGCCTGGTGAGAGGGCTGGGGCTCAGACCCAGAGGGACAGGGTAAGGAGGTGCGGGCCCGGGCTTCTGAGGTCCGGGTCAGACTGGGGCTCGGCGGCAGAACCAAGCAGAACGGCGGCAGCAGTAGGaggcggcagcagcagcggcgcCTCAGGTTCTGGCCTGCCAGGGAGTTGGGCGGTTCTGACCCGTTAACCTCCAGGACAGGTGTGCGTGAGGGGAGGTAGCGGAGCTCTTACCTTGATCTAGCGCCGGCTCCTGTAGCAGCGGTAAGTACGGCTGACGAACACAAAAGCACGCGCGTCGCACAATTACCCTCCACTCACTGCAGTTTAGACACCCCTTGGCGTCTCTGCCCTTCAGCTGTGCAGCCATAGAGGCCAGTGTCATATGAGCCCCTGAGTTGGTGTTCCTTCCTGTGTTGCTTGTTTGTTCATCCTGCTAACCCTCCTGACTAACTCTCTTTATCtttgtcttctgtgtgttttatttacttatttaagtGTCTGTTTTCGCTGGATAATTCCAAATCTACAGTATGACagatctccccccccccccccccccttctcccccTACAAAAAGAAACTGATTTAAAAGGAGACGTTTCCTCTCTGAAGCAGCAGTGGTGTGTTTGTCCAGAGCCCGTCCTCTGTAATGAGAAACAGACTTGTTTCGGTTCGGTGTTCGAGAATTGCAGCCCGGTGAGCCCGACCAAACAAAAGTATCTGCACGATTTTTCTGAGCAGTTGATGCAAACCTACCCACCTCCTTTCTCAACCACTGCCACCTCGCCCAATACATTTATATCCGTGCCAAATCACCCCCCCAAGACCCTCTTGGCGTGTCCTTGAGCCCCTGCAGATTTTGACACAGGACCGGTGAGATGTTTGGAGCCCAAACGCCCTGTCCCAGGCTGCCCAGACTGGGGGCAGATGTTCaaggattctctctctctctctctcagcctctgtctctctctctttctctctgagaGTCCACTGTATGTTatcctgttttattttcagtcctAGGACATCTCTCCCAGTCTTGCTTGGGCCCCTGTGCAGGAAGCTCTAAAACCTCTTGCCACTGCAGTACCAGTGTTTTAAATTTGACCGCCAGTCCCTCTTGAACGCCAGCTCGTCCCTCTGATCTGCAGGCACAGCCGTGTCTCCCGCACTATGAAGCAGTGCCATGCAAACGCACCCCCACTCGCCCCTGGCCATAGGTTATAGTGAGGGGGGGGCAGGGCGCAGAGAAGCATGAGGCCGCTGTGTCAGAGACGCGAGCGCTGAACTCCAGACTGGATgagtgtgcgtgtctgtctgtgtgtctgtcggGTGGGCAGTGGgcgcttttattttatttatttttatttgggggggggggtttgtgtTTCAGCAGGTCAGTGTGCAATAGCGggttgtaaatgtttaaaagatgACCTGTGCCATTGAGCACCAGTAGTGAAGTGGCAAATACATAGTTATGACTCAAAgtcctgtgtgtgagtgtgtgagaatcagtttgtgtgtgagtgagatgGTGTAAGTGGAAACCGTTTTGTGGTTGGGTTGGCACTCTGCAGTCCTTCAGGCCGCTGGCAGGTAAGTCCCGAGTCTGACGTGACTGGAGAGTTTCAGGTGAATCgcgaggggggtgggggctgtggTGAGGCTTCACTCTGCAGTGGTTGTTGGGGATGAATCAGAGACTGAGTTGAGCAGTCTGAGACCTGGCCAGAGTGCTGGGTTTGgagatgtttgtgtgtctgaagtGTCTGGCACAGTCAAGGTAAGTGAAGCCAGGAGAGTTAGCTTTGCAAAGGTGTCGTTGATTTATTGGATTTAGTCATTTGCCTGGGAGGGCTGGGGACGAGACACTCGCGTTGTCTCACACTCTGTAGTGCAGTGGATTAATCcaaataaacatcaatacatgatCAGCAAAATCAGCTGCCCTTTGCAAAGTCCTTGTCACCAGATTCATCCTCCTCCCACTCGATCTGCCCTCACCTTCACCCCCATCTTCCTGTTGTCATCTCCAGGCTCTAATTTGTCTTTTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93716 lncRNA downstream 1110 41450090 ~ 41451333 (-) True G75064
TU93685 lncRNA downstream 42831 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 46644 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 182260 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 188536 41262768 ~ 41263907 (-) True G74970
TU93744 lncRNA upstream 92594 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 190473 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 209293 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 304669 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 351470 41812333 ~ 41815261 (-) True G75170
AMCG00014974 mRNA downstream 16815 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014972 mRNA downstream 36432 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014964 mRNA downstream 120673 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014967 mRNA downstream 225636 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014962 mRNA downstream 461652 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014975 mRNA upstream 2731 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014971 mRNA upstream 9951 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014977 mRNA upstream 28026 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014978 mRNA upstream 77423 41538286 ~ 41561967 (-) True AMCG00014978
AMCG00014984 mRNA upstream 213921 41674784 ~ 41687445 (-) True AMCG00014984
TU93668 other downstream 120777 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 282892 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 518489 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 527006 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 543057 40906381 ~ 40909386 (-) False AMCG00014958
TU93726 other upstream 9431 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 658424 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 831058 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1048006 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1062856 42523719 ~ 42534278 (-) False AMCG00015028

Expression Profile