RNA id: AMCG00014974


Basic Information

Item Value
RNA id AMCG00014974
length 2954
RNA type mRNA
GC content 0.62
exon number 15
gene id AMCG00014974
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41421861 ~ 41435628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCTGTGGGGCGTCACTGGAGGGCGCTGGGAGGCAGGCAGCACACAGGCTGCATTGTCCGCCCTGTGCAGTTAAAGCTGGTGCTTTTCAGTGTGTTGTGAAGTGCTCAAATCGTGCGGCGTGCAGCCCGCGGCGCGCGTTGTTCTCCCGTCTGGACCGGCGTCggcgctgcgctgcgctgcgctcGGGTTCAGTGAGATGTTCTCAAGAAACCCGACGCGGCTCCAGTGGAAAGTCGGTGTCTGTGTTACACCCGGGGTGTGTTTTAACCACCAAAGGACATTTTTATGACTGTTTTTCCTGTCCTTTTCTCCCTGGGATAAACTTTTACAAACTAATTAAGcgcagtttttaaataattgatattATATACCGAAGAGGCACCATGGGCTCTCTGAAGGCGCTGCAGGAGTGGTGTCGGATACAGTGCGAGGGCTACCGAGACGTGGACGTTAAGAACATGACCTCGTCTTTCAGGGACGGCCTGGCGTTTTGCGCCATCATCCACAAACACCGACCCGACCTCATagATTTTGACTCCCTCTCCAAAGACAGCGTCTATGAGAACAACAGGctgGCGTTTGAGGTGGCCGAGGCGGAGCTGGGCATCCCGGCGCTGCTGGACGCTGAGGACATGGTGTCCATGAAGGTGCCTGACCGGCTCAGCGTCATCACCTACGTCTCCCAGTACTACAGCTACTTCAGTAGCAAGAACCACGCTGCCCCACCAACCATGAAGAGGCCAAGTGGCACGGCCCACAGCGAGCCAGCCATGAAGAAGCCTTCCGGGGAAGACGGCCAATCAAAGCGCAGTACCATGAGCAGCACCTGCGCAGCCTGCGGGAGACACGTGCACCTGGTGCAGAGATACCTGGCAGACGGGCGGCTCTACCACCGCAACTGCTTCAGGTGTCAGGAGTGTAGCAGTACTCTGCTCCCAGGATCCTACAGGCCAGGCAGCGAGGAGGGTTCCCTGGTCTGCACACATCACTTTGGGAAGCCTTCGGCCAATCAGAACGGCCGTCCGGACCTCAGCATGGGGGCGCGACTGGGAGGTGGAGCCTCATCGGAATCGGTGGGAGGAGGTGCACAAGTGGCTCCTCCCCCAACCCAGGAGAAGAGCCAGACTGAGACGCTCCCTGTGGGCACCCCTGGGGAGACTGGCAGTCTGGAAACTgtagagaagagagagaaagagagggaaggaggagaggagacagagaagggggaagagaaaaaagaggAGAAGGCACAGCCTCCTGTGCCTCCCAATCCTTTCGAGGAAAGCGAGGGAGAAGAGGGGTTGGAAGAGAATCGAGAGACAGAGGCCAGAGCCAATGATAGCAccctccccaccaccccccctGCATCATCCACAACTGGCCAATCGGGAGGGCCAGGCCGACCTGTCCCCGCCCCTCGCCGTGTGTTCGACATCGACACCTCCCCCTCTCCcgccccacccccccgcccaaCCCCCCGCTCCAGAACGCCCCGCCCAGCTGACAGAGATCCAGTGGACTCCAGAAGCTCCACACCCATGCCCACACCCACTCACAGATCCCAGTCCCACGGCAACCTGACCAATGAGACCCGGCCTAAGGACCCCCCTTGGATGGCTCTTGTCCAATCAGAGCCCAGGAAGAagccgccccctccccctccccctggaACACCCCCTCGTTCTGGTTCGGTGCCGGCCCTGAGGGGGGAGGAGCCTCAGCCCACCACTCCCCCACACCCCAGTAATCCCTTCGAGGacggggaggaagaggaagaggcgGGGCCCCAGCATGAGGGGGAGGCAGGGCCAGAGGGTTTGGTCCCGCCCACTGTGGTTGCCAGTCACCCCTGGTACAGCATCACCAGCCCAGCCAGTGGCTCCAGCACACCCAGCCCTGGCCACACAGACAGCACCTGCAGACATAAGCGACCAGCACCCAGAGCCCCGCGGCCCTCGCCATCAGctccccgcccctcctccttctccccccccccttccccggCGCTCAGTGCGGAGAGCGTCTCCTCCGACTCCTCCTCCTCACGGGGCCCCGCCGCCTCTCCCGGCTCCCCAGTCACCAAGAGCGTGTCGGAGCCGTCGATCAGCATCCCGGCCAATCAGAAGCCGGAGCTGACCGCCCGGAGCCCCTCCCCCCATGCTCCCGCCCCCTCGGGACCGCCGACCAATACCAGCTCGGCACCGGCCACCCCGCAGACTAACCGCAGCACAACCACTGGAGGGGTTCGCATCacccgccccccgcccccccggccACCCTCCACGCCCAGCCCCCTTGCCAAACCCGGGACCCCCCCCTCACAGCCCCTCCCTACACTGAACAAGAAGACCTGTAAGGAGAATCCCTTCAACAGGAAGTCTTCCCCCActgccaccccccccaaaaCGACTCCCCCCCGCGGCCCACGCCCTgcccgcccccccgcccccggtCATGGATTCCCCCTCATCAAGAGGAAGGTCCAGTCAGATGAGTATATCCCAGTAGAGGACATCTATGTGGAGATGGGTCAGATCGAGCGGCAGCTGGACGAGCTGGAGCGGGGGGGCGTGGAGCTGGAGCAGAAGCTGCGTGGCTGCCAGAGCGatgaggaggaggagaagctgCTGGTGGGCTGGTTCAAGCTCATCCACGAGAAGCAGCTGCTGGTGCGCAGGGAGGCGGAGCTGGTGTACACggcgaAGCAGCAGTCTCTGGAGGAGAGGCAGGCAGATGTGGAGTACGAGCTGCGCTGTCTGCTCAACAAGCCAGAGAAGGAGTGGTCAGAGGAGGACCGGGCGCGGGAGCAGCAGCTGATGCAGGAGCTGGTCACCATCATAGAGCAGCGCAACAACATTGTCACCAGCCTGGATGAGGACAGACAGAGCTTGGAACTTCGCACCTTGTCAATCATCTCCAGCTCCCTGATTTTCTGCAGAGGAGAGGAATGA

Function

GO: NA

KEGG:

id description
K19948 MICALL1; MICAL-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93685 lncRNA downstream 12249 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 16062 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 151678 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 157954 41262768 ~ 41263907 (-) True G74970
TU93582 lncRNA downstream 210550 41211039 ~ 41211311 (-) True G74950
TU93716 lncRNA upstream 14462 41450090 ~ 41451333 (-) True G75064
TU93744 lncRNA upstream 117829 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 215708 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 234528 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 329904 41765532 ~ 41766815 (-) False AMCG00014981
AMCG00014972 mRNA downstream 5850 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014964 mRNA downstream 90091 41330438 ~ 41331770 (-) False AMCG00014964
AMCG00014967 mRNA downstream 195054 41177884 ~ 41226807 (-) True AMCG00014967
AMCG00014962 mRNA downstream 431070 40989672 ~ 40990791 (-) True AMCG00014962
AMCG00014959 mRNA downstream 498995 40912194 ~ 40922866 (-) True AMCG00014959
AMCG00014973 mRNA upstream 16815 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014975 mRNA upstream 27966 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014971 mRNA upstream 35186 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014977 mRNA upstream 53261 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014978 mRNA upstream 102658 41538286 ~ 41561967 (-) True AMCG00014978
TU93668 other downstream 90195 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 252310 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 487907 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 496424 40922964 ~ 40925437 (-) True G74887
TU93508 other downstream 512475 40906381 ~ 40909386 (-) False AMCG00014958
TU93726 other upstream 34666 41470294 ~ 41472194 (-) True AMCG00014971
TU93975 other upstream 683659 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 856293 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 1073241 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1088091 42523719 ~ 42534278 (-) False AMCG00015028

Expression Profile