RNA id: AMCG00014977


Basic Information

Item Value
RNA id AMCG00014977
length 1893
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00014977
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41488889 ~ 41515465 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAGAAAGCAacataataaGCCTGGACCTGGGGATCTTCAAACAAGAGGAGCTGCACAGCTTCTTCACAGAAAACATGTCCGAGCTCTCCAGCACCGAGGAGCCTGATAGGCTGCTGCGCTGCCTGCGGGACTATGACATCATCACACAGGAGGAGTACGGGAAGGTGAGTAGAATGACTCAGTGGCTCGATCAAGAGGAGGCGCTGTATACTGTGCTGGACAGGCTGGGGACAGAGGAACTGCACCTGATCAAGGGCTTCTGGAGCTGCGCCTTCAAGGGCTTCATCTTAGAGTGCAATCCCACTCTGCAGCGCCTGCAGCACAGGCTGCTGGAGATGCTGGACGAAGAGAGGTCAAGAAGGACAAGAGAGGCACCAGAGAGCACAGAGgccagagaggaggagagacaggATGAGCTGCAACCAGGACCCTCCACTACAGACTCCTCACCAGAGACACTGGACAGTTCAGAGgccagggaggaggaggaggaggaggagccagGGCTCCCAACACCATCAAAGTCACTGCGGCAGAGGAAGCCCCCCCCCTCTCCACTGCAAGACTGCACCACAgGTAAGGTCGGGCGCAGGTCCAGGCTCACAGATCACTGCAGCAATGGCAGTGTGTATAGAAGAGCACAGCTGACCCCACTTATCCCTGTCACCTGTGGGGAGAAGGAGGGCATGCTGCACCCAGACGAGCTGGCTAAAGGCTCAAGAGTGAAGATCATCCTCTCAGAGGGACAGTGGTTCAGCCCTGCTGAGTTTGAGACGTTTGGAGGAAAAGGAAGCTGGAAAAAGTGGAAACTGAGTATCAGGAGTCAGGGGATATTTCTGTCTCTATTGATCAAGGGGGaggctgggaaggagagaggagttccggttcaaaggtggTGTAACTggaaggtgaggtgggccttcTGGTCTATGgagagaaacagaaagatggacagagagacCAGAGGTTGGGACTTGGGATTTTTCACTGAGGAACAGCTCCATGACTTCTTTAAGAAAGAAATAGTGGTGCTCTCCAATACCGAAGAGCCCATTAGGCTGCTGCGCTGCCTCAAGACTGATGGCATCATTACACGGGAGGAGTACAAGAAGGTGAGTGGAACGGCAGAGGGGCCCGAGCGAGAGACTGAAATGTACAATGTGCTGGACAGGCTGGAGGAACAGAAACCACACTTGATCAAAGGCTTCTGGAGCCGCGCCTTCCAGGACTCGATCCTAAAGCAGAATCCCACTCTGCAGCGCCTACAACAAGAGCTACTGCgaTACTTGCCTTCACCTGAGATGCTGGAGAGGTTGAAAGCAAGAGACGAGCAGAGAAGGGAGGAGCAGCCATCAACGTCATCAAGCTCACTTCAGCCGAGGATGTTCCCCAGCACTCCAGAGCAGGACTATACAACAGGCTATGATGAAGAATTTGAGACTCGCCCAGACAGCCCAGCTTCATCAGGGACACTGCAGAGGGTGGAGATcagtgaggaggaagaggacccAGGCCCCTCTAGACTATCAATGTTACTGCAGCCGAGGAAGACACCCCATGAGCCACCACAGGCCAGCGTGATACAAGTCAGcagtgaggaggaggacagTGCAGAGCTGGCCTCACCTATACCTGTCACCTGTGGGGAGAAGGAGGGCATGCTGCACCCAGATATCTTTGCTAAAGgAACAAGACAGATGAGCATCTTCTCAGAGGGACAGTGGTTCAGCCCCTCTGAATTTGAGATGTTTGGAGGAAAAGGAAGCAATAGAAAGTGGAAAACCAGTATCAAGCATCTGGGAAAATCATTAGAAAAAGTGATCAAGGACATACAGCCCAAGACGCCAGCAGTCGAAGAAATAAATCCACAGCTGATAAATGAGGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93716 lncRNA downstream 37556 41450090 ~ 41451333 (-) True G75064
TU93685 lncRNA downstream 79277 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 83090 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 218706 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 224982 41262768 ~ 41263907 (-) True G74970
TU93744 lncRNA upstream 37992 41553457 ~ 41554704 (-) False AMCG00014978
TU93821 lncRNA upstream 135871 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 154691 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 250067 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 296868 41812333 ~ 41815261 (-) True G75170
AMCG00014971 mRNA downstream 14408 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014975 mRNA downstream 19337 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014973 mRNA downstream 28026 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014974 mRNA downstream 53261 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014972 mRNA downstream 72878 41413412 ~ 41416011 (-) True AMCG00014972
AMCG00014978 mRNA upstream 22821 41538286 ~ 41561967 (-) True AMCG00014978
AMCG00014984 mRNA upstream 159319 41674784 ~ 41687445 (-) True AMCG00014984
AMCG00014985 mRNA upstream 173088 41688553 ~ 41689983 (-) True AMCG00014985
AMCG00014983 mRNA upstream 175412 41690877 ~ 41698688 (-) True AMCG00014983
AMCG00014982 mRNA upstream 188990 41704455 ~ 41724237 (-) True AMCG00014982
TU93726 other downstream 16695 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 157223 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 319338 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 554935 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 563452 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 603822 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 776456 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 993404 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 1008254 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 1284686 42800151 ~ 42803287 (-) True G75497

Expression Profile