RNA id: TU93744


Basic Information

Item Value
RNA id TU93744
length 625
lncRNA type sense_over
GC content 0.44
exon number 5
gene id AMCG00014978
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41538286 ~ 41561967 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGTCACCTGTGGGGAGAAGGAGGGCACGCTGCACCCAGACAAGCTTGCTAAAGGCTCAAGAGTGAAGAGCATCCTCTCAGAGGGACGGTGGTTCAGCCCCCCTGAGTTCGAGATGTTTGGAGGAAAAGGAAGCTGGAAAAACTGGAAACTGAGTATCAGGAGTCGGGGGATTTCTTTGTCTCTTTTGATCCAGGAGGGGCTTCTGAGATGTCCAGTCCAAACCCACAGGAAAACTAATGACAGGACGTGCAGCCCAGGACACCGGTGGTCAAGGAGAGCAGCCCAGAGCTGATAAATGAAGTATAAACCATCAAGAAAAAGGATACTGTGtctcagtattttattatttaaatcttgtGCTCTGTAGTAAACATGACAATTTATCTCATTCGGTGGCTCTGTGTGAAACAGCTGTATTTGGGGCCCTGGGGCTCCAGTAAAGGACTTCTGCTGCATCGGGAGTTTTGTTCAGAAGAGTCGTATACAAGTCTCAGGCCTGGATTTTTTCAAGACAAAACGGAAATCATAAGCCAAAGAATAATTTGTCAGGGTTTTTCAtaaagatttgtattaagttttttttaaataaagatttttaCTCAAAGCATAAAATGTACTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93716 lncRNA downstream 102124 41450090 ~ 41451333 (-) True G75064
TU93685 lncRNA downstream 143845 41406917 ~ 41409612 (-) True G75035
TU93682 lncRNA downstream 147658 41405462 ~ 41405799 (-) True G75032
TU93617 lncRNA downstream 283274 41269927 ~ 41270183 (-) True G74978
TU93609 lncRNA downstream 289550 41262768 ~ 41263907 (-) True G74970
TU93821 lncRNA upstream 96632 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA upstream 115452 41670156 ~ 41672310 (-) True G75144
TU93838 lncRNA upstream 210828 41765532 ~ 41766815 (-) False AMCG00014981
TU93849 lncRNA upstream 257629 41812333 ~ 41815261 (-) True G75170
TU93942 lncRNA upstream 423051 41977755 ~ 41991977 (-) True G75241
AMCG00014977 mRNA downstream 37992 41488889 ~ 41515465 (-) True AMCG00014977
AMCG00014971 mRNA downstream 78976 41470814 ~ 41474481 (-) False AMCG00014971
AMCG00014975 mRNA downstream 83905 41463594 ~ 41469552 (-) True AMCG00014975
AMCG00014973 mRNA downstream 92594 41452443 ~ 41460863 (-) True AMCG00014973
AMCG00014974 mRNA downstream 117829 41421861 ~ 41435628 (-) True AMCG00014974
AMCG00014984 mRNA upstream 120080 41674784 ~ 41687445 (-) True AMCG00014984
AMCG00014985 mRNA upstream 133849 41688553 ~ 41689983 (-) True AMCG00014985
AMCG00014983 mRNA upstream 136173 41690877 ~ 41698688 (-) True AMCG00014983
AMCG00014982 mRNA upstream 149751 41704455 ~ 41724237 (-) True AMCG00014982
AMCG00014981 mRNA upstream 200902 41755606 ~ 41766826 (-) True AMCG00014981
TU93726 other downstream 81263 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 221791 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 383906 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 619503 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 628020 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 564583 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 737217 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 954165 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 969015 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 1245447 42800151 ~ 42803287 (-) True G75497

Expression Profile