RNA id: AMCG00014990


Basic Information

Item Value
RNA id AMCG00014990
length 763
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00014990
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41985975 ~ 41988707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATTTTGTCTCAAGTAAATTGTAGAAAGTACTTTTCCGGACGGGACTGGACTGgtgttggtgtgtttgtgtgtgtggtggtcaTGTGTGACGAAAGGCTTGTCTCTTTCTGCAACAAACTGAATCATTGTAGCCTCCGCAGCAGCAAGTGAACTACAGATCAAGTGCCAGGGGTTGattatattgattgttttcatcGTTGCCTCGGCTCAAAGCTGACTGCCCCTGCTACTGCAGACTGACTGACGGGCGGATTgtatggagcattGATAGGATTGCACTGTCTGTTTGCAGTGGCTGCTGCTGACCTGCCCCCACAATGCCTCTATTCGGCAACACCTTCAGCCCCAAGAAGACCCCCCCTCGGAAATCCGCCTCCCTCTCCAATCTGCACACAAGGAACctgcagctggaggaggagaacaATCTGCTGAGACTGAAGATTGACATCCTGCTGGACATGctcTCAGAGACGACCGCCGAGACCCACCTGATGGAGAAAGAGATGGAGGAGGTGAAGAACCAGAGTCGACGCaggaaatgagagagagggagaataaATGGATTGGGGAATAAGAGAAACAGAGTGACTAGATCCAGAGAAAGTTATATAAACCAATAcatataaagtataaatatctatacaaagtgtgtgtgtgctgtgggcCAGTGTGACCCCCAGGACTATGGCTGTTGTGCTTGCCTGTATTGTTAtactgctatttttattttgtgtaaatgtttgtaaataaaGAACACAAG

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93849 lncRNA downstream 170714 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 219160 41765532 ~ 41766815 (-) False AMCG00014981
TU93821 lncRNA downstream 312933 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA downstream 313665 41670156 ~ 41672310 (-) True G75144
TU93744 lncRNA downstream 431271 41553457 ~ 41554704 (-) False AMCG00014978
TU93949 lncRNA upstream 4856 41993563 ~ 42022081 (-) True G75247
TU93955 lncRNA upstream 71671 42060378 ~ 42063901 (-) True AMCG00015010
TU94054 lncRNA upstream 178817 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 297587 42286294 ~ 42286584 (-) True G75364
TU94091 lncRNA upstream 297951 42286658 ~ 42286893 (-) True G75365
AMCG00014989 mRNA downstream 3176 41979321 ~ 41982799 (-) True AMCG00014989
AMCG00014991 mRNA downstream 17263 41966064 ~ 41968712 (-) True AMCG00014991
AMCG00014992 mRNA downstream 136206 41845859 ~ 41849769 (-) True AMCG00014992
AMCG00014993 mRNA downstream 148254 41828109 ~ 41837721 (-) True AMCG00014993
AMCG00014994 mRNA downstream 163428 41815737 ~ 41822547 (-) True AMCG00014994
AMCG00015001 mRNA upstream 34395 42023102 ~ 42038200 (-) True AMCG00015001
AMCG00015010 mRNA upstream 71583 42060290 ~ 42062894 (-) False AMCG00015010
AMCG00015008 mRNA upstream 75290 42063997 ~ 42070963 (-) True AMCG00015008
AMCG00015007 mRNA upstream 94337 42083044 ~ 42097284 (-) True AMCG00015007
AMCG00015006 mRNA upstream 118190 42106897 ~ 42112141 (-) True AMCG00015006
TU93726 other downstream 513781 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 654309 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 816424 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1052021 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 1060538 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 130580 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 303214 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 520162 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 535012 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 811444 42800151 ~ 42803287 (-) True G75497

Expression Profile