RNA id: AMCG00014994


Basic Information

Item Value
RNA id AMCG00014994
length 1425
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00014994
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41815737 ~ 41822547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCATGGTGGAGTGTGTGGAGGGTGCCGCTgctcactgtgctgtgtgttctcTCTCAGGACCAGTACTCCGCTGATCTCTATCACTTCGCCACCAAGGAAGATGACTACTCCAACTACTTTATCAGAttgTTAGAGCTCCAGTCTGAATATCACAAGAGGTCCTTCGACATTCTGGAGCGACACATCTCAGAGCTGAAGGAGAACAATGACAACACAgtgcccAAGGTGCCCAGGTCTCAGGCCCGGGTTTACGGGGTGCCGCTACAGTGCCACCTACAGGCCAGTGGGCGCCAAATCGCCCTGCCCATTGAGGCCTGTGTGGGCATGTTGCTGCGGACCGGCATGAGGGAGGAGGTGGTGGAGGAGTGGAGCCAGAGGAGTACTGCACTGACCCGCATGCTGTGGCAGGTCAGAGATTGGAgtgggggagaggaagagagaaatgcgggagagggagagcgacaGAGAAAGAGTGGCGCACTGAAGTCATACCTGAGAGAGCTGCCCCAGCCCCTGATGACCTCTGAACTCTACAATGATTGGTTCAAAGCAGCTGGgtaTGTGGTGAAGTTCCTGGCCAAGCTGGCAGAACAGCAGGAGCTCAATAAGATGAGTCCCAGCAACATCGCCATCGTCCTGGGACCCAACCTGCTGTGGCCACACAGAGAGAGTGAGAGCTCTCTGCTGGACATGGCCTCGGCCTCCTCTGTGCAGGTGGTTACTGTGATTGAGCCGCTGATCCAGCACGCACACAGCCTTTTCCCTGGAGTGTACCCAGAAGTCGGAGGTTCTGACCTGGGCGCACAGACTCGCCGCACCAGCATGTGGGAGAACCCGCGCCCTGCTGGCCCCACCCCTTCGGAAGTGCCCAGCTTGGGACAGAGCCAGGGCCCGAGCCAGAGCCAGGACCCAAGCAAGAGCCAGGGCCCAAGCAAGAGCCAGAACCTGAGCCAGATCCAGGGCCCGGGCAAGAGCCAGGGGCTGAGCAAGAGCCAGAACTCAGAGACCGGGCCGCCCCAGCCCAGCCCCGCTCCACACCCTAGCTCCCCGGGCATCAGCACACCACCACACAAAGGGACCAGGCTGCGGTGCTACATGAGCCTCCTGCAGCACACCAACCCTGTGTTCTCCCTGCTGCACCCTGTCGCCAAGAAATCCTTCCTGCAAAGACCAGCCATCACCCAAGGCAAGGGGCCTGGATCCCAGACCAAAGGTTCCCATCATGGGCCTACCAAACCCCAGGCTCCAGTACAGCCCCCAGCCCAGCCAGGAGCCCCCAAGGTCCATTCGGGAGCCCCTAAGGCCCAGCCGCAAGCTGAGGGAAAGAAGGCCCCAAGCCGGAGAGGGAACATCCGAGCGCCCAACGTCCCGCCTCCTCGGCCACCAGTCAGCAATCGTGTCTCCTCACCTGCCCAGTGA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93849 lncRNA downstream 476 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 48922 41765532 ~ 41766815 (-) False AMCG00014981
TU93821 lncRNA downstream 142695 41651336 ~ 41673042 (-) True G75145
TU93820 lncRNA downstream 143427 41670156 ~ 41672310 (-) True G75144
TU93744 lncRNA downstream 261033 41553457 ~ 41554704 (-) False AMCG00014978
TU93942 lncRNA upstream 155208 41977755 ~ 41991977 (-) True G75241
TU93949 lncRNA upstream 171016 41993563 ~ 42022081 (-) True G75247
TU93955 lncRNA upstream 237831 42060378 ~ 42063901 (-) True AMCG00015010
TU94054 lncRNA upstream 344977 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 463747 42286294 ~ 42286584 (-) True G75364
AMCG00014987 mRNA downstream 19673 41780186 ~ 41796064 (-) True AMCG00014987
AMCG00014981 mRNA downstream 48911 41755606 ~ 41766826 (-) True AMCG00014981
AMCG00014982 mRNA downstream 91500 41704455 ~ 41724237 (-) True AMCG00014982
AMCG00014983 mRNA downstream 117049 41690877 ~ 41698688 (-) True AMCG00014983
AMCG00014985 mRNA downstream 125754 41688553 ~ 41689983 (-) True AMCG00014985
AMCG00014993 mRNA upstream 5562 41828109 ~ 41837721 (-) True AMCG00014993
AMCG00014992 mRNA upstream 23312 41845859 ~ 41849769 (-) True AMCG00014992
AMCG00014991 mRNA upstream 143517 41966064 ~ 41968712 (-) True AMCG00014991
AMCG00014989 mRNA upstream 156774 41979321 ~ 41982799 (-) True AMCG00014989
AMCG00014990 mRNA upstream 163428 41985975 ~ 41988707 (-) True AMCG00014990
TU93726 other downstream 343543 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 484071 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 646186 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 881783 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 890300 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 296740 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 469374 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 686322 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 701172 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 977604 42800151 ~ 42803287 (-) True G75497

Expression Profile