RNA id: AMCG00015008


Basic Information

Item Value
RNA id AMCG00015008
length 1698
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00015008
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42063997 ~ 42070963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTACTTTGTGCGTCTCGATACTCTCTTCAGTCATATCAGACTTTGTCACCTCCTGTCTCCTTCacttctctccgtctctctctgttCTTCTCTTGTTCCATCTTTCTCTCCCCTTACCactcttcttttctctctcttgctcttttgtctctgtatttacCTCACCTCCTCACCTTCTCCTGTCTCCATATCCCTGTTTGTTCTTCTGTCTTTCACTGTCTCTCCCACTGAGCCCTCTCATTCCCGCATCTCTTTCTAGAGCTCCCTCCCTCAGTGTGAGGATGTTCCTGGTGGTGGAGATGGTGGACACAGTGAGGATCCCTCCCTGGCAGTTCCAGCGCCAACTGAACGATGCCATCTCTGAGGAGCTGAACAAAAAACTTGCCAACAAgGTGGTGTACAATGTgggcctGTACGTGGTTTTCCGGCCCTTCCTGGACGAGATTCTGATCGGGAAGATAAAGTACTGCAGCCAGGAGGGGGTGTGGCTGTGGGAGTACGAGACGGATGAAGGCGCCCACGACCTCTACATGGACCAGAGCGAGGAGATCCGCTTCCGGGTTGTGGATGAGGCCTTCGTAGACACCTCCCCCAGTGGCCCCGTCTCTGCAACACCTGATGCCCCAGGAACTGCTGTTGCTGATGACAACAGCCAGAAGAAAGAGGCGCCCTACACACTGATAGGGTCCATCAGTGAGCCAGGCCTGGGTCTCCTGTCTTGGTGGAGCAGCAGCTAGCAGAGAAGACAGAAACTGAGAAACAGACCTACAGACCCTGCAGTAGATCTTAATCATCTTCCTGACTGTCATTAACCTGAGTTAGccagtgcagcacagcacagcacagacactggaatacctgtgtgtgtgtatctatctcTCAGTCTGTCAGTGGGGATCTGTGTTCACCCAGGAACCCAGGACTCTGGCCTGAGATGCTccactatatatgtgtgtggttAGGAGAGGTACACTATCACCCTCTATTGTccagatggaaaacaaatgccaaCTGCACAGAAATGTCTCTGACCTTGACAGGAATTTCCAATTTggtttaattgtgattttttttattttgccaaatgagttttatttttgtatgacaaataatgtattattattatgtttgttttgacagatagagattaaaaacaattaagtacATTAACtagtcaatacaaatatttaatgtaaccCTATTGTACTCTAACAGGCACTGGGCACAAGGGTCAAGATGATATTATTGTGACTCCCAGCTGGCTCAGCTGGTACCCACAGGAGACTGGGGCCTATAGACTCACAGTCATTTGTAGTGCAGTGCATTGCTTTGGCTTATTAGCAGTGCACCCGTGTGGACGCCTTTTAAAATAGTTGTTTTCTTCAGAGACGGACAAAGCTGGGTCAGACACAGTGTTAATATTTGTGgagtgtggtggggggggtgtataGATTGGACTGTCTCTGGACCCTCCCTGTATATATGTGTCAccccttaaaataaatacaccgtTACATTATTGACAAGTTGTTTTTTACACCAGTAAACTGTCACCAGTGTGGAAACTGCATGAATGCTGTAGTGATAGTGTTCTGGTATTGGACCCATCTCACATTAGACTGCAACCCAGACGTTTAAATTGATTCAAGATGATGTAGTAgtgttagtagtagtaatcaTGATTCACATAACTTAAC

Function

GO: NA

KEGG:

id description
K03022 RPC8, POLR3H; DNA-directed RNA polymerase III subunit RPC8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93955 lncRNA downstream 96 42060378 ~ 42063901 (-) True AMCG00015010
TU93949 lncRNA downstream 41916 41993563 ~ 42022081 (-) True G75247
TU93942 lncRNA downstream 72020 41977755 ~ 41991977 (-) True G75241
TU93849 lncRNA downstream 248736 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 297182 41765532 ~ 41766815 (-) False AMCG00014981
TU94054 lncRNA upstream 96561 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 215331 42286294 ~ 42286584 (-) True G75364
TU94091 lncRNA upstream 215695 42286658 ~ 42286893 (-) True G75365
TU94093 lncRNA upstream 218226 42289189 ~ 42289415 (-) True G75367
TU94094 lncRNA upstream 218627 42289590 ~ 42289858 (-) True G75368
AMCG00015010 mRNA downstream 1103 42060290 ~ 42062894 (-) False AMCG00015010
AMCG00015001 mRNA downstream 25797 42023102 ~ 42038200 (-) True AMCG00015001
AMCG00014990 mRNA downstream 75290 41985975 ~ 41988707 (-) True AMCG00014990
AMCG00014989 mRNA downstream 81198 41979321 ~ 41982799 (-) True AMCG00014989
AMCG00014991 mRNA downstream 95285 41966064 ~ 41968712 (-) True AMCG00014991
AMCG00015007 mRNA upstream 12081 42083044 ~ 42097284 (-) True AMCG00015007
AMCG00015006 mRNA upstream 35934 42106897 ~ 42112141 (-) True AMCG00015006
AMCG00015012 mRNA upstream 50700 42121663 ~ 42123872 (-) True AMCG00015012
AMCG00015011 mRNA upstream 59082 42130045 ~ 42134449 (-) True AMCG00015011
AMCG00015009 mRNA upstream 63950 42134913 ~ 42147238 (-) True AMCG00015009
TU93726 other downstream 591803 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 732331 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 894446 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1130043 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 1138560 40922964 ~ 40925437 (-) True G74887
TU93975 other upstream 48324 42119287 ~ 42131232 (-) True G75272
TU94096 other upstream 220958 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 437906 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 452756 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 729188 42800151 ~ 42803287 (-) True G75497

Expression Profile