RNA id: AMCG00015009


Basic Information

Item Value
RNA id AMCG00015009
length 2078
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00015009
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42134913 ~ 42147238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACAGATCAACAAGCACGCATACGTACACAGATGAAAGGACAGACAGAGGCAGGGGAAAGGCAGGTTGCATGCATAcaatatacagacagacaggggagGGACCTGGCGAAGGACCCCGTGTGGCCGAGCGAGGCGGTCTAAACTTGAAGCCAACGGGTAGAGAACTGAAAGTGAAATCTTTCCACATGCTTCCCTCCATGCAGCGAGAGTGGCCTACAGCCTGGCGACCCGCACACCCCACTATGAATCTGGACTAATCGCAATAGTAAAGcaccaacagcagcagcagtccgGAAACAACACAGCGCCGCGGCAGACAGATCTGTGTCCCTCGATATAGACAAGACTGTACTGTGTCAGGACTCGGGTGGGCGGCGGAGAGgggcatttatttttggaaacgACATGGATGTGGACAGACAGAGACGGCGGGAGGAGATTCAGAAAGCCCTGGGCTTCATACAgtttggagtgttaGCGTTTCTGACACAGCTGGTGTGTAACCTGCTGGACGAGGGGAACTGTGTGTACCGTGAGGGGGGCCTGCGGCAGGCGGTGGTGCACTACACCGAGGGCCTGAGCGTAGGGCAGTATGCTCGCACCGAGAACTTGCCCATCAACCCCGAGCTGCTCGAGTGCCTCTACGTGAACAGAGCTGCTGCACTCTATCACACTGGGGACTACACGCGCGCCCTGGAGGACTGTGACAGTGCACTGGCGCTGGGTGAGGGGGAGGGCAGCCGCCGGGCGCTGTACAGGAAGTGCCTGTGCCTGCAGGAGCTGGGCCGACTCCGAGAGGCCTACGACTGTGGTACCAGCTGCCTGCTCACCGCACCTCAGGACAGACAGGTAGTAGAACTGGCCCAGGAGCTGGCCAACAAGTTGGGCCTGAAGTTCCGCAAGGCCTACATCAGCCCCCAGAATGACTCAGGGACATCTGGAGGGGAGAGTAATGGAGAAACTGCACCCTCTAGTGAAGAGTGTATTCCCGCCCCCTTGGCCACACCTATCCCTGTGAGTGGCGATGATCCCTTGGCGACCCCTGATGACCTCAGCGTGACCTCTAACCTCCAGGGTCACGGGGGATCAGGGGGTGCCCAGGCCCGGGTGCCCTACTCTGTGCCAGAGACTGTGGATGACGTGCCGGACTGTGAGGTCATTGGCGACGAGATCGACACCTTATTAGACTGCATCCCCAAGGGGGCAGAAATGAGCATGCCTGCAGTACAGGGTGCCATCCCTACCAACATGCCAACCCGGATGTTGCCCCCCTACCCCCCTGCCGGTCCCAGCATGCCCCCACCCTCACCCAAACTGCCCTCGGCCTTCTTCGGCACGACGGTGGGCCAGCTCAACACGCTGGACTCCTTTGCTGGCCTGGCAGCTGGCGATGCCCCACCCCATGGCCCTCCCCAGGAGGCCCTGGATGTCTTGGACTCCTTCTgcccctccttctcctctgctgctgctgcttcccTGGTTGGGGTGGGGCAGGTAGGGGCTGTGGTCGGTGGAGGTGGGCTGGACTCGCTGTCTGAGTTCACACTGCCAGGAGGCAGAGTGACTCACAACCTGATCCCAGGCCTGAGGACACCTACTCACACTAATGGCCCaggctcttctctctctctgctgtcaaGGAACCCCCTGCTGGCCACACATGAGTTCAGACAGGCCTGTCCAGCCTGCTACAGCCGCATAGGTCCAAAGGTGATGGATTACCAATACCAGCCGGAGGCGGCACACCGTTGTAAGCGTGATGTGTTGCTTTGCCGACTGAAGGGGGCAGAGGACCCCACCTGGAAGCGGATCAGGCCCCGCCCCGCCCGCACTAACTTCCTGGGAGCCTTCGTGCTGTGCAAGGaGGTGCAGGAGCGGCAGGAGTGCAAGTACGGGGAGAACTGCACCTTCGCGTACTGCCAAGAGGAGATCGATGTGTGGACGCAGGAGCGCAAGGGTGCGCTGAGCCGTGAGCTGCTGTTCGACCCGCTGGCCAGCACAGAGCGCCGGGCGCTGAGCGTCACACggctgctgcagctgcacatGGGCATGTTCATGTTCCTCTGTGAGGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93955 lncRNA downstream 71012 42060378 ~ 42063901 (-) True AMCG00015010
TU93949 lncRNA downstream 112832 41993563 ~ 42022081 (-) True G75247
TU93942 lncRNA downstream 142936 41977755 ~ 41991977 (-) True G75241
TU93849 lncRNA downstream 319652 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 368098 41765532 ~ 41766815 (-) False AMCG00014981
TU94054 lncRNA upstream 20286 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 139056 42286294 ~ 42286584 (-) True G75364
TU94091 lncRNA upstream 139420 42286658 ~ 42286893 (-) True G75365
TU94093 lncRNA upstream 141951 42289189 ~ 42289415 (-) True G75367
TU94094 lncRNA upstream 142352 42289590 ~ 42289858 (-) True G75368
AMCG00015011 mRNA downstream 464 42130045 ~ 42134449 (-) True AMCG00015011
AMCG00015012 mRNA downstream 11041 42121663 ~ 42123872 (-) True AMCG00015012
AMCG00015006 mRNA downstream 22772 42106897 ~ 42112141 (-) True AMCG00015006
AMCG00015007 mRNA downstream 37629 42083044 ~ 42097284 (-) True AMCG00015007
AMCG00015008 mRNA downstream 63950 42063997 ~ 42070963 (-) True AMCG00015008
AMCG00015017 mRNA upstream 36450 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015016 mRNA upstream 49259 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015015 mRNA upstream 79660 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015020 mRNA upstream 162485 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015022 mRNA upstream 171556 42318794 ~ 42321081 (-) True AMCG00015022
TU93975 other downstream 3681 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 662719 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 803247 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 965362 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1200959 40931797 ~ 40933954 (-) True G74890
TU94096 other upstream 144683 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 361631 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 376481 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 652913 42800151 ~ 42803287 (-) True G75497

Expression Profile