RNA id: AMCG00015011


Basic Information

Item Value
RNA id AMCG00015011
length 807
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00015011
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42130045 ~ 42134449 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACTGCTGTGGGAGTGTCTGGTGCACGTGGTGCGCTCGGCCAATGTGCGCTACAGCAAGGTTCGTCCACTGCACCCGTTGTGCCAGTTTGACGTGTGCCGGCACGAGGTGCGCTACGGGTGCCAGCGTGAGGACAGCTGCTCCTTCGCCCACTCCGTCATCGAGCTCAAGTGCTGGGTGCTGCAGCAGGACTCGGgTATCACACATGAGGAGATAGTTCAGGAGTCAAAGAGACACTGGCACCGTCTGGAGCAGAATGCACAGAGACAGAAGCCGTCCCATATGAATCACCCCAGTGCTCATGACGGTGCCggaggggggggtggagggggaggaggtggggggtgtggcggaggaggaggaggaggaggaggaggaggggggggaggagggggaggaaagACGAAGGGCCTGAATCTGAGGATGAAGTTCGTCTGGACGAAGGAGAGGAGGGTGCTGCTGGTGAAGTCCTTTGAGAAGAAGAAGTGGGTGGTGGTCCGGCCGCTGCCATTCTCCCGCACCTACCCGCTGCAGTATGACATGTGTGTCCACGTGGTGAAGCAGAAGAAGTGCCACTACATTGGGAACTGCTCGTTCGCGCACAGCCCAGAGGAGAGGGACGTCTGGACATACATGAAGAACAACAGCTtGAGAGACATGCAGCAGATGTATGACATGTGGCTCACACTGACCAATCAGAACCGGCGGACGGAAGGCCCTGCGCTGACCCCGCCCCCCGAGGAGAAGCAGATCACCATGCCGACGGACTACGCAGAGCCAATGGTGAGTGGGACCCGTCTGTAG

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93955 lncRNA downstream 66144 42060378 ~ 42063901 (-) True AMCG00015010
TU93949 lncRNA downstream 107964 41993563 ~ 42022081 (-) True G75247
TU93942 lncRNA downstream 138068 41977755 ~ 41991977 (-) True G75241
TU93849 lncRNA downstream 314784 41812333 ~ 41815261 (-) True G75170
TU93838 lncRNA downstream 363230 41765532 ~ 41766815 (-) False AMCG00014981
TU94054 lncRNA upstream 33075 42167524 ~ 42167876 (-) True G75333
TU94090 lncRNA upstream 151845 42286294 ~ 42286584 (-) True G75364
TU94091 lncRNA upstream 152209 42286658 ~ 42286893 (-) True G75365
TU94093 lncRNA upstream 154740 42289189 ~ 42289415 (-) True G75367
TU94094 lncRNA upstream 155141 42289590 ~ 42289858 (-) True G75368
AMCG00015012 mRNA downstream 6173 42121663 ~ 42123872 (-) True AMCG00015012
AMCG00015006 mRNA downstream 17904 42106897 ~ 42112141 (-) True AMCG00015006
AMCG00015007 mRNA downstream 32761 42083044 ~ 42097284 (-) True AMCG00015007
AMCG00015008 mRNA downstream 59082 42063997 ~ 42070963 (-) True AMCG00015008
AMCG00015010 mRNA downstream 67151 42060290 ~ 42062894 (-) False AMCG00015010
AMCG00015009 mRNA upstream 464 42134913 ~ 42147238 (-) True AMCG00015009
AMCG00015017 mRNA upstream 49239 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015016 mRNA upstream 62048 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015015 mRNA upstream 92449 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015020 mRNA upstream 175274 42309723 ~ 42313025 (-) True AMCG00015020
TU93726 other downstream 657851 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 798379 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 960494 41169041 ~ 41169551 (-) True G74945
TU93516 other downstream 1196091 40931797 ~ 40933954 (-) True G74890
TU93511 other downstream 1204608 40922964 ~ 40925437 (-) True G74887
TU94096 other upstream 157472 42291921 ~ 42292295 (-) True G75370
TU94183 other upstream 374420 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 389270 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 665702 42800151 ~ 42803287 (-) True G75497

Expression Profile