RNA id: AMCG00015021


Basic Information

Item Value
RNA id AMCG00015021
length 1964
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00015021
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42326180 ~ 42332650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGAGTGGGACGCATACTACCAGCATGAGGATGAGGAGGCGGAGCATGATGAAGGGGAAGAGTCTGCAGTGGACTATAAGTTCTCGGGCCGAGACAGCCTAGTGTTCCTGGTGGATGCGTCCAAGGAGATGTTTGAGAAGGGAGAAAAGGACGATCTCTCACCCTTCGACATGACCATGCAGtgcgtGCGCAGTGTGTATACCAGTAAGATTGTGAGCAGTGAGAGGGACCTGCTGGCCCTGGTGTTCTATGGCTGTGCGAAGCACCGCAACTCCGTGGATTTCAAGCACGTCTACGTCTACCATGAGCTGGACTGCCCTGgtGCTCAGCGGGTGCTGGATGTGGACAGGCTGCGGGGGGGGCAGCAGGGGGCCCAAGCAGTGGTGGATCTGCTGGGGAGGGGTGTGGGACCAGCGGTGTCCCTGGGGGAGGCGTTGTGGGTTTGCGCCAACCTGTTCAGCGACGTAAAGCTGCGGCTCAGCCACAAGAGAGTTATGATCTTCACCAACCAGGACCAGCCACATGGGGGTGATGCACACCGGGACCGGCTGGCCCACACCAAGGCCAGGGACCTCAAGGACACGGgcGTGGTGGTGGACTTGATGCACCTGCAGAAGCCTGGCGGGTTTGACATGTCTCTCTTCTTCTGTGACATCATCACACCGCCGGAGGGGGAGGAGGCGGGGCAGGAAATGGGTCTGCAGCTGGAGGCTTCTGGAAAACTGGAGGACCTGCAGAGACGAGTCAGAGCCAAGGAGCTGAAGAAAAGAGCGCAGTCCAGGATGACCCTGTCCCTGGGTGATGGGGTGGGAGTGGCAGTGGGGGTGTATGTTCTGGTCCGGGGGGCGGTGAAGCCGGCTGCAGTCAGACTGGCCCGGGACTCCAACGAGCCGGTGTATGGCAGCAGGAAGATTGTCCTGGAGCGCGAGGAGACAGATGAGGTGCGGAAGTTCGAGACGCCGGGTCTGGTGCTGATCGGGTTCAAGCCCCTGGCCCGGCTCAAGATGCACCAGCACATCCGCCCCGCCCACTTCATCTACCCTGAGGAGGCGCAGGTCACAGgcagctCCACTGTGTTCTCCGCTCTGCTGCGGAGGTGCAGTGACCGGGGTCTGTTTGCCTTGTGTCGCTACACCCCCCGGCGAAACTGCCCCCCCCGCTTCGTTGCCATGGTGCCTCAGCGGGAGGAGCTGGACGACAACAAGGTGCAGCTCATGCCCCCAGGCTTTCACCTGATCTTCCTGCCATTTGCTGATGACGTCCGCACCCTGGACACCCCCCAGAAGACCCCTGCCACCCCCGAGCAGGTGGACAAGATGAAGGAGATTGTGCACAAACTGCGCTTCAAATATAGGAGTGATGCCTTTGAGAACCCTGTCCTGCAGCAGCACTACAGGAACCTGGAGGCGCTGGCCCTGGACCTACTGCAGCCCGATCCCATTGAAGACCACACCTTGCCCAAGGTGGATATGATGGATAAGAGGCTGGGGCCCCTGGTGCAGGAGTTCAAGGAGCTGGTGTACCCTCCCGACTACAACCCAGACAGCACCAAGAGCACCGCAGCCAAGCGTAAAGCAGCAGAGGGGGCCGCCGGGGGGGAGAAGCGGCCGCGTGCGGAAGTGCCCGAGGATGAGCTGCGGGCCCACGTGGAGAAGGGCACCCTGGGAAAGCTGACCGTCCCTGTGCTGAAGGAAGCCTGTCGCTCACTGGGGGTCAGAACCACAGGCACCAAGAAACAGGAGCTGATAGACGCACTGATGCAGCACTACACACACTGACGCTGCACTACACACACTGACGCTGCACTACACACACTGAAGCTGCACTACACACACTACACACACTGACGCAGCACCACACGCACTGATGCACTGGCACAGtactacacacactgacactacaCATTCTgacatattttgatatttttgtacttgataataaaaactttaaacaaaaagaa

Function

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94109 lncRNA downstream 1260 42321096 ~ 42324920 (-) False AMCG00015023
TU94110 lncRNA downstream 1260 42321096 ~ 42324920 (-) True AMCG00015023
TU94100 lncRNA downstream 26683 42299215 ~ 42299497 (-) True G75374
TU94099 lncRNA downstream 27038 42298917 ~ 42299142 (-) True G75373
TU94098 lncRNA downstream 27388 42298345 ~ 42298792 (-) True G75372
TU94121 lncRNA upstream 13000 42345650 ~ 42346781 (-) True G75384
TU94151 lncRNA upstream 144358 42477008 ~ 42487718 (-) True G75403
TU94155 lncRNA upstream 159060 42491710 ~ 42491924 (-) True G75406
TU94188 lncRNA upstream 223979 42556629 ~ 42580140 (-) False AMCG00015035
TU94189 lncRNA upstream 243308 42575958 ~ 42580140 (-) True AMCG00015035
AMCG00015023 mRNA downstream 1175 42321817 ~ 42325005 (-) False AMCG00015023
AMCG00015022 mRNA downstream 5099 42318794 ~ 42321081 (-) True AMCG00015022
AMCG00015020 mRNA downstream 13155 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015015 mRNA downstream 92115 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015016 mRNA downstream 113155 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015025 mRNA upstream 20851 42353501 ~ 42354515 (-) True AMCG00015025
AMCG00015024 mRNA upstream 55667 42388317 ~ 42389132 (-) True AMCG00015024
AMCG00015026 mRNA upstream 71688 42404338 ~ 42428775 (-) True AMCG00015026
AMCG00015027 mRNA upstream 100491 42433141 ~ 42438138 (-) True AMCG00015027
AMCG00015031 mRNA upstream 180324 42512974 ~ 42521901 (-) True AMCG00015031
TU94096 other downstream 33885 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 194948 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 853986 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 994514 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 1156629 41169041 ~ 41169551 (-) True G74945
TU94183 other upstream 176219 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 191069 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 467501 42800151 ~ 42803287 (-) True G75497

Expression Profile