RNA id: AMCG00015022


Basic Information

Item Value
RNA id AMCG00015022
length 1633
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00015022
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42318794 ~ 42321081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGTGCGCCGGctgaggggggaggggtggggcaTGGGGCGGGGCCCAGGCCTGGAGGGGACAGCAAGGGGCGGAGCTTACAGTGGGAGGCTGGGCTGTGGAGGCTGGGCTGTGTGCCCTGGAGGCTGGGCAAactaaaaaagaagaaggagaaggaggataataggagagaggaagaggaggaggagcagggagagggggaggcagaCAGTGGTGGAGGAGGCGGCTGCAGAACCTTTCCCCCCTCTggcccccccccaccaccccccatcTATCACGAGAAACAGCGTAGGGAGCTGTGTGCTCTGCACGCGCTGAACAACGTCTTCCAGGACGGGGCGGCCTTCAGCAGAGAGACCCTGCAGGACATCTTTCAGAGgCTCTCTCCCAACACTCTGGTCACACCCCACAAGaagagcatgctgggaaatggCAACTATGACGTCAATGTGATCATGGCAGCCCTGCAGACACGGGGCTTTGAGGCCGTGTGGTGGGACAAAAGGAGGAACGTGGACACCATCTCGCTGCCCAATGTGACGGGCCTGATCCTCAATGTGCCGTCCCACCTGCGCTGGGGTCCACTGTTGCTGCCCCTCAAGCGCCAACACTGGGTCTGTGTGCGCGAGGTGGGCAGCGTCTACTACAATCTGGACTCCAAGCTCCGCAGCCCCCACCGCATTGGCACCCCAGAGGAGCTCAGGAAGTTCCTGCGCCTTCAGCTGCGAGGCAAGAACTGCGAGCTCCTATTGGTTGTGCCGGAAGAGGTAGAAGTTCGCCAGACCTGGAGGACGGACAGGTGCTGAGCCCAGGGGCCACAGCTAATTGGACAGATAGGGGCGAGACTTGGTTTGATTTTCCCCACCGAAGGAAGCCGCCCAGGACACTGACCAATGAGAGATGGAGCTGCCTGTGCAGGGGGCGGGGTGTGCGGTGGATTACCATGGTGAAAGACACACCCCCTTGCCCTCACTCAGAGACTGTCCCATGGGTTCTGacgattaatatatatatttttttgttgttgtctctGTAATTTTTGGTTGTGCGGTGGGAGTTGAGTGTTGGGATAAGCTGTACAGCAGTGGcaatgcatctgtgtgtgtgtgtcttttctcACTCTCTGGCTTTCCTCTTCATCTGTGcatcccctccctccctctctctctttctctctgttgctcttttctgtttctctttcacacaattcttttgttttccatttttgtctcTTCCCCCCCACTCTGTTTTTGGTTTCCCCTGTATACAGATGTCAGGTTACAGAAAGTGAAGCGCTGCAGTCTTCTCTGATGCTTTACGAATCTCAAGACtttcagagttttttttgttgttatcttttgttttttccacgtttaaaataaaactcctAATACTGCACTGTGCCGTCTGCTACTAGTGTGTCGGTGTgaacgagagagagaatgtCTGAGATTGCCTCTGTATGTGATCATGCATCTGTATGAttgtgtctgtgcgtctctgcaTGTGattgtgcgtctgtgtgtgatATTGTCATTCGGGCCCATCATCtcctttaataaatactgttcaTTGCGATTTCTCAGCAGTGTCTGCGTTTACAGTTTGGGGCGAGGGAGACTGTAGGGG

Function

GO:

id name namespace
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94100 lncRNA downstream 19297 42299215 ~ 42299497 (-) True G75374
TU94099 lncRNA downstream 19652 42298917 ~ 42299142 (-) True G75373
TU94098 lncRNA downstream 20002 42298345 ~ 42298792 (-) True G75372
TU94097 lncRNA downstream 25070 42293471 ~ 42293724 (-) True G75371
TU94095 lncRNA downstream 28528 42289909 ~ 42290266 (-) True G75369
TU94109 lncRNA upstream 15 42321096 ~ 42324920 (-) False AMCG00015023
TU94110 lncRNA upstream 15 42321096 ~ 42324920 (-) True AMCG00015023
TU94121 lncRNA upstream 24569 42345650 ~ 42346781 (-) True G75384
TU94151 lncRNA upstream 155927 42477008 ~ 42487718 (-) True G75403
TU94155 lncRNA upstream 170629 42491710 ~ 42491924 (-) True G75406
AMCG00015020 mRNA downstream 5769 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015015 mRNA downstream 84729 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015016 mRNA downstream 105769 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015017 mRNA downstream 122299 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015009 mRNA downstream 171556 42134913 ~ 42147238 (-) True AMCG00015009
AMCG00015023 mRNA upstream 736 42321817 ~ 42325005 (-) False AMCG00015023
AMCG00015021 mRNA upstream 5099 42326180 ~ 42332650 (-) True AMCG00015021
AMCG00015025 mRNA upstream 32420 42353501 ~ 42354515 (-) True AMCG00015025
AMCG00015024 mRNA upstream 67236 42388317 ~ 42389132 (-) True AMCG00015024
AMCG00015026 mRNA upstream 83257 42404338 ~ 42428775 (-) True AMCG00015026
TU94096 other downstream 26499 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 187562 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 846600 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 987128 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 1149243 41169041 ~ 41169551 (-) True G74945
TU94183 other upstream 187788 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 202638 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 479070 42800151 ~ 42803287 (-) True G75497

Expression Profile