RNA id: TU94109


Basic Information

Item Value
RNA id TU94109
length 1403
lncRNA type sense_over
GC content 0.49
exon number 2
gene id AMCG00015023
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42321096 ~ 42325005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTACACAGGTTTGTGTTCAGGGAGCTCTGCGAGAGAGTAGACGGAGGAATACACtaacagagaggaaaaaagacgGGCAGAAGACGAGCGGCGTGAAAGGCAGAAATAAACACAGACGCCAACCTGAGGGACCTGCAGAGATTGCATCTGCAGCAAGGACTCCGAGAGTGCCAGGGGGGctaggtgtgtgtgggggtggttCGAGCAGACGCTGCCACCCCactgacaaacaaacagacagagcgagagagacagatggacacaGAGACGCAGTGCGAGCCAGGGGCTGAGACAACCGGATCAATGTCCAGTGTggggacacacagagacgggAAGTGGCACTGACCTCATCCacctcttttttttgttctttcccGCGATGGCGACGCCTCGGCTTCTCTTGCAGCACGGAGACGCCTCCCCTTCCTTTGAGGCCCTTGCTCTGCCCCCTTCGCATCTACCGCCAGGCTCTGCATTGGAATATTTCTAGATGTTTTTCACAAACAAGTGGAAGAAAGCAgcaacaaccaaacaaaagcaaagttctcttttgccttaatttatttattggatcTTTTTCTCCTCTTGTTGTGGCCCACGCTCAGCCATGGGGAGGACTGCAGAgcggtgagggagggagagagggacggAGACGGATTGAAGGAGTCCAAAGAAAAATAGATcgccctctttttttttttggggggggNNNNNNNNNNGTTTTATTTTGATCAGAAACTggattttctgtgtgtgtgtgtgtgggggcgtGTGGTGACATCACCGTAAGGCCGTGAGGATCAGGCTGTTCACACCTCCTGATTTTTAAGACACTCGCCTATTTCACTTTTCTTGGTTTTTATctgccaccccccacccacccacacaccaGGGTAATCTTGACTCTAACTACAGCTTTACAATTcctcatatatttattattattattattatatattttcaactaaAGGGAACTTCTGTTGTTTTAAGGGAATTCAAGAATACtataacacatttaaacttAAATCTCTCGCTATATAtctgtctaaatatatatatttggaaaagCCAAATTCTCACAATTTGCTGACGCTGTTTTAGAAGATCACTGTGAGTGCATTTTGCCGAGAGAGGGAGACGCTAGGTGGAGAGGGTGGGGACTGTGCTACAAGTTCCCAGCACTAGGGGGTGTTTTCTCTTCCCCTGCTTGTCTGTAAGTGTGTTGATGGGCTGGAGTGCTGTTTTGTAAACTCAGCTGTGACTCAGTTGGGCTGGAGCTGTAATCAGACCCTCTCTCACACCCCCACACTTGCCCCCCCCCTTTCTCACCTTGTGGATGGGCCGGGCGGTTGCCGAGGTAGTTGCTGCCGTGGTGGTGGTTGCCGTGGCGCTGGCGGGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94100 lncRNA downstream 21599 42299215 ~ 42299497 (-) True G75374
TU94099 lncRNA downstream 21954 42298917 ~ 42299142 (-) True G75373
TU94098 lncRNA downstream 22304 42298345 ~ 42298792 (-) True G75372
TU94097 lncRNA downstream 27372 42293471 ~ 42293724 (-) True G75371
TU94095 lncRNA downstream 30830 42289909 ~ 42290266 (-) True G75369
TU94121 lncRNA upstream 20730 42345650 ~ 42346781 (-) True G75384
TU94151 lncRNA upstream 152088 42477008 ~ 42487718 (-) True G75403
TU94155 lncRNA upstream 166790 42491710 ~ 42491924 (-) True G75406
TU94188 lncRNA upstream 231709 42556629 ~ 42580140 (-) False AMCG00015035
TU94189 lncRNA upstream 251038 42575958 ~ 42580140 (-) True AMCG00015035
AMCG00015022 mRNA downstream 15 42318794 ~ 42321081 (-) True AMCG00015022
AMCG00015020 mRNA downstream 8071 42309723 ~ 42313025 (-) True AMCG00015020
AMCG00015015 mRNA downstream 87031 42226898 ~ 42234065 (-) True AMCG00015015
AMCG00015016 mRNA downstream 108071 42196497 ~ 42213025 (-) True AMCG00015016
AMCG00015017 mRNA downstream 124601 42183688 ~ 42196495 (-) True AMCG00015017
AMCG00015021 mRNA upstream 1260 42326180 ~ 42332650 (-) True AMCG00015021
AMCG00015025 mRNA upstream 28581 42353501 ~ 42354515 (-) True AMCG00015025
AMCG00015024 mRNA upstream 63397 42388317 ~ 42389132 (-) True AMCG00015024
AMCG00015026 mRNA upstream 79418 42404338 ~ 42428775 (-) True AMCG00015026
AMCG00015027 mRNA upstream 108221 42433141 ~ 42438138 (-) True AMCG00015027
TU94096 other downstream 28801 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 189864 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 848902 41470294 ~ 41472194 (-) True AMCG00014971
TU93668 other downstream 989430 41329313 ~ 41331666 (-) True AMCG00014964
TU93577 other downstream 1151545 41169041 ~ 41169551 (-) True G74945
TU94183 other upstream 183949 42508869 ~ 42513574 (-) False AMCG00015031
TU94191 other upstream 198799 42523719 ~ 42534278 (-) False AMCG00015028
TU94277 other upstream 475231 42800151 ~ 42803287 (-) True G75497

Expression Profile