RNA id: TU94189


Basic Information

Item Value
RNA id TU94189
length 3776
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00015035
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42556629 ~ 42589623 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCACACTGGGTCGGCTGGTCACCACGCTGGAGCTGCTCTCCTCCAAGCAGGACACTGTCAACACCCTGCTGCAGCGGCTGGCTGACCGGcactgggggggaggggagggagaagcAGGGAAGTAGGCAGTGATAGAGGTGATAGAGCCCCCCAGCCTTGTTCCTCCCCCCACGCACTCTCCTGCTGGCCGAATGGACACTTCCCCTCAGTTGTTAGAAAATCAAACACAGGAGAATTCAGGTGCCTTGTCTGGAATTCCATAGTTCACTGAAATCTCCCCAACTGTCACTATGAAGTCAAATGAAGTCAtggagagctcagctggaaagAAGCCTGGCAGGAGAGAGGGTCCCTGGGGCCAGGCTGGGCTGGGGTGGGCTTGGGCTGGTGTCTTTTATGTGACACCGGGCTGGGCTTGTTGCAGTCAGCCTGGTCGCGCCCCCACAGCGGCGGCCACTTGCTCTCGGCCTAAGTCAAAGGTCATGCGGAGGTGCAGGGGTCAGTTTTCTGAAGGGGGGACGGGCAACACTCCAGCAGGCAACAGCCCTGGGAAAGAAGCCTGGGTTGCCATGGAACCCCCCTGTGCTCCTGCTGCCCCATGACCATTGAAGGCCTGTGTGCATGTGGACTACAGCCAGCCTCTATAATGTCACCTCCCTGTGCTCAGGGGCAGGGACTGGCTGCCCTGGgtcctgtttgtgtttctatGACAGGCCTCGGTGCAGTGATAGTTTgcagtgtgttattattattattattattattattattattatatgtgtgACTTTGTGTCCTCATTGTGCGCAGTACAGTActgttttaaactatatttaaaccAGTAGACTAGTCTTAATTCAAGTTAGACTAGTCTATTATAAGTTAGATAGTTGCATAAATATTAACACTGACTAATCCTTAGCCtgaaaagttagcctcctcaAACCCAGGCTAACTTAGAATTCTCAGGCTAATCTTCCCATTGAAACTGATGGCCTGAGACTATGGGACACCATCACTGATGATGTTAGGCGGATCCTCCCATTGACTCATACACAACGTGCTGTCAATCCCACAAAATATCAAGATTCCTCCCCAAagattttaataaccaaattcTGTGCTTCATTTAGGTTGTTTTAGCACATTTCTCCATCATCTCTGCCTGTCTTTTACATACCGCTCACACGGCGGGTTGATGGctttaccttttattttattttaacccaaatcttgtgtttcagtgtgttaatgcaagtttcagaaaatgtcccccaaagtatatatatttcaataacgaGCACAGCCATTCAATTACTGTGAACTGGTATCATTGCTATTTTAGAGAAGCAATTGTTGTTAAACCATGTTGTTTATCTTCTTGAAGTGATTTAAAATTCCCAgtatgtgttgtgtgattgatgaagtaagaccagtctaaggaaagatgGTTTTATGCAACGGTTTTAACTCAGTGTCTATTATCagtatgacttataattatacaaagacaaagacttagtctGTGTTTATGCAACTGGTCCCTGGCCTCACTGTGGACAAATTAAGATTACTgcttactcacacacacacacatattgacaCATACATTcatgcatacacacagactctctcacacacattgtgacactgtttgtgtgtctgtgtgtactgaATCCCAGAGTACTCAGTTGACAGCAACTCCCTCCCTGTGTGACTGCTGTATGTCTTTGTAGTCGGGGGGCAGGGGGGGATATAcaacaacatgaaagaaaattatACATGACAAATcttcatttgctttttttcttctatcaaatgttaaattttttagttgatttttattttgtaggttttttttcacttcataaaacatgcttttttccatttggttcctgtgtttttctgtctgctATGGTCCATTGTCTTGCtacacagtaataataataacatgaataattaataGGGCTGGGCTGTATACTGTAAAAAACTATATATGGGTATTCATTTACAGACcagtttggacttttactataccttcatatcggtattttaaagtttcatatgctaaattgaataatttactaattacgGTCATTCAGTCATGGCATTCGGCTGCCAATAAACTTACAACTTGCTGCGCCAGGTGCTTGTGACTGCACTGTCTGACATCAGATGCATATGATCAAAGAATGcctgttgtgtttatttagcacagatctgcacagctccaccaatgggatctatgtcgattctgcagatctgcgcagaactttgccaaatctgcactacaagaGGGCGACCGCCTTTCTTCAAAAACCCTACAGAAATCAGTGGATTGGAtgacttcattttttattatttttatattattttcgtttttatttcaaaaattggatttgccaatcatttaagttaCAACTTTATTGTGCACcacagatttacattatatttgttagaataatttatgtaattatttaatcaagCATTGACCATGCTAAAGTACagatctagaattctatatctatggtgttgacaatgctgttcacagcttcattatGTGATAAGTTGACGTTCACCTCCGCTAacaagggggcagcagtagGTCTCATTCAGCTTCacacgtccctcttgatttctgcatagcCCTTTGTCTCACAGCCACAACTCAcctcctgcagcagcttctcagagatGCGCCGGGCTGAGGTGATGCTGAATTTCTGTGCAGAGCTGTGCTTCACGAACGTGACCCTTATTTTGGAATGAATACTGTTTCAGCcaattaatgaaaatacaataaatgacaatatttcaGCTTATAAAAAGAAGCTGGAAAGAAAGAGTACAGCACAATTGCTTTAACATGTTccagtattttgcatttatatctTACTCTTACTCTCCTGTGTGAAATAATTTAATCCCATCAAACATTTACTCTCCAAAAATGCGAAGAGCATTTCCCCTCCGACTCTGATCCACAGAAAGGAAATCAATGGGTGTGTGACCCATTCTCATCTCTAAATGCAGAGACATCCTTGTTGCCATTGTTGGAGGACAAGCTTATGGACTTGTAAATTGACGAGGATCTGaagttacaatttcaaaaactgtCTCTGCCTGTTTTCTAGATCAAAGTAAATACCCACAACTCAGTGAAATGCCAGTCAAAAGCTTACTCCCATTTAATTCTACTTACCTTTGTTTTAGAatagaactaaaactaaatacCGAAAGAGGCTGAGCATTGGAAAGACGCTCCGAGTGTCCTTGTCTGAAATTCACCCCCGGATTTAACTTGTGTCTACAAGGCAGGCATAGAAATCTCATTAAGAAGCTGTCTTCCCCACCTACTTCTTTGACCTAGTCAGGAGGCCCTGGACTCCAGCCTTGAACACAGTGCCTGCTGcACTGTCAGTATCTGACAAAgaagtccctgacctccttccggcaattactcaagatgcatctgttcagactgtacttgtttattagtaatttattctcctgtaaaattgcacttatacaacgtacaacgttactagtactcgtattgtttattttgatttcctctaTGCCCCTTTTCCCTTAACTCTTAAcgatgacttcacatcttgtctgcacttactagcttttacaatctaggatgtaggagttgtattgtttactgtatatttcctatacacttgtgtaaattggaatttgtaaattgcattatgctttgaactgtattgtattattacactttgtattgctcttatattttgtaagtcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94155 lncRNA downstream 84034 42491710 ~ 42491924 (-) True G75406
TU94151 lncRNA downstream 88240 42477008 ~ 42487718 (-) True G75403
TU94121 lncRNA downstream 229177 42345650 ~ 42346781 (-) True G75384
TU94109 lncRNA downstream 251038 42321096 ~ 42324920 (-) False AMCG00015023
TU94196 lncRNA upstream 6872 42587012 ~ 42589623 (-) False AMCG00015035
TU94238 lncRNA upstream 59166 42639306 ~ 42640881 (-) True G75466
TU94240 lncRNA upstream 61344 42641484 ~ 42642433 (-) True G75467
TU94239 lncRNA upstream 61923 42642063 ~ 42646678 (-) False G75467
TU94241 lncRNA upstream 63613 42643753 ~ 42645711 (-) True G75468
AMCG00015029 mRNA downstream 23398 42542587 ~ 42552560 (-) True AMCG00015029
AMCG00015028 mRNA downstream 51217 42523332 ~ 42524741 (-) True AMCG00015028
AMCG00015031 mRNA downstream 54057 42512974 ~ 42521901 (-) True AMCG00015031
AMCG00015027 mRNA downstream 137820 42433141 ~ 42438138 (-) True AMCG00015027
AMCG00015026 mRNA downstream 147183 42404338 ~ 42428775 (-) True AMCG00015026
AMCG00015036 mRNA upstream 17797 42597937 ~ 42611607 (-) True AMCG00015036
AMCG00015034 mRNA upstream 55886 42636026 ~ 42638867 (-) True AMCG00015034
AMCG00015040 mRNA upstream 70805 42650945 ~ 42656759 (-) True AMCG00015040
TU94191 other downstream 41680 42523719 ~ 42534278 (-) False AMCG00015028
TU94183 other downstream 62384 42508869 ~ 42513574 (-) False AMCG00015031
TU94096 other downstream 283663 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 444726 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 1103764 41470294 ~ 41472194 (-) True AMCG00014971
TU94277 other upstream 220011 42800151 ~ 42803287 (-) True G75497

Expression Profile