RNA id: AMCG00015036


Basic Information

Item Value
RNA id AMCG00015036
length 1041
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00015036
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42597937 ~ 42611607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGACCGCCTTCGCTACCCAGGGGGGGATGATCGGGGACAATACGCGGCTGCTCCAGGGGCTAATTGCCAAATTGAACCTGAAGCTTGAGCGTCTTCCCGTGCAGCAGCCCGCTCTCCCGGCCGCCCAGCAAGAGTTCCCGGTCCCGATCCTGGCCACCCAGCCGGAGTTCCTAAAGGAGGCCAGGGAGGAAGCTGTGAGTGGTGTTGACTGTGAAGAGCTACCTGTTCTCACTGGGACCAACAGTCCAGCCTGGCTGGTAGCGAGGAGGGCAGCAGTGGCAGAGACGCCAGAGCCTGCGGATCAGGAGAATACAGCCACCATGGACTCACTGGAGTTCTTCACCCAGGAGGAGCTGGTTGACTTGCTCCACAGCCGCAAGACGGAGCTGTCCTGCCTCACTAAGCCCCGCCGCCTGCTCAACCAGCTCCGGGACGCTGACGTCATCTCCGAGGACCAGCACACAaAGGTGCTGCGTGCCAAGGGGCTGGAAGGGAGGGAGCAGGCGCTGTACCAGCTGCTGCACTGGCTGGAGGCCGAGATCCCACACAAGATCAAGGTCTTCTGGGGGTGTATCTTCCAGGAGCACATCATGCAGCACTACCCCCTCTTGAGACTACTGAAGAACAGCATCCTGGATGGCACATACACTCGCCAGAAGAAGCTTGAGAAGGATGAGGAGATGGAGGAGGGGAAAGAGAAGAAGGAGGGGAAAAAGCAGGGGCAGAAAGAGGGtagaaagaacaacaaaatcACCCACGGTACTCCTCTGAATAAGAAAGGCAAGGGCTCTCCCGAGGCAATCTGGAACTGGCCGCTGTACAAGAGCCAGCTGCCTGTGACCTGTGGGGACAAGCAGGGCACACTGTACAGGGACAAACTGGCCAAGGGGGAGCGGTGTGTGCTGGCAGAAGGACGCTGGTTCAGCCCAAGGCAGTTTGAGGAATTTGGGGGCAAGAGCAGCTCCAAGAACTGGAAACTGAGCATCCGCTGCAATAAAGAAACACTGCACAGATTGatacaggtgagagagaggtaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94196 lncRNA downstream 8314 42587012 ~ 42589623 (-) False AMCG00015035
TU94188 lncRNA downstream 17797 42556629 ~ 42580140 (-) False AMCG00015035
TU94189 lncRNA downstream 17797 42575958 ~ 42580140 (-) True AMCG00015035
TU94155 lncRNA downstream 106013 42491710 ~ 42491924 (-) True G75406
TU94151 lncRNA downstream 110219 42477008 ~ 42487718 (-) True G75403
TU94238 lncRNA upstream 27699 42639306 ~ 42640881 (-) True G75466
TU94240 lncRNA upstream 29877 42641484 ~ 42642433 (-) True G75467
TU94239 lncRNA upstream 30456 42642063 ~ 42646678 (-) False G75467
TU94241 lncRNA upstream 32146 42643753 ~ 42645711 (-) True G75468
TU94245 lncRNA upstream 93557 42705164 ~ 42705391 (-) True G75472
AMCG00015035 mRNA downstream 8591 42580015 ~ 42589346 (-) False AMCG00015035
AMCG00015029 mRNA downstream 45377 42542587 ~ 42552560 (-) True AMCG00015029
AMCG00015028 mRNA downstream 73196 42523332 ~ 42524741 (-) True AMCG00015028
AMCG00015031 mRNA downstream 76036 42512974 ~ 42521901 (-) True AMCG00015031
AMCG00015027 mRNA downstream 159799 42433141 ~ 42438138 (-) True AMCG00015027
AMCG00015034 mRNA upstream 24419 42636026 ~ 42638867 (-) True AMCG00015034
AMCG00015040 mRNA upstream 39338 42650945 ~ 42656759 (-) True AMCG00015040
TU94191 other downstream 63659 42523719 ~ 42534278 (-) False AMCG00015028
TU94183 other downstream 84363 42508869 ~ 42513574 (-) False AMCG00015031
TU94096 other downstream 305642 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 466705 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 1125743 41470294 ~ 41472194 (-) True AMCG00014971
TU94277 other upstream 188544 42800151 ~ 42803287 (-) True G75497

Expression Profile