RNA id: AMCG00015040


Basic Information

Item Value
RNA id AMCG00015040
length 666
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00015040
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42650945 ~ 42656759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAACTCGGTGGAAATAGTGAGCCCCTATCTCTTTCGCTACAAAGGCTTTGTCTTCGCTCATGGAGATACCACCCCGGAGTACATCAACTCACTGCAGGACTTCGAGATCCGCGACAGTGATGTATTCCTTGTCACCTACCCCAAGTCAGgcacaGTATGGACCCAACAGATCATCACCCTACTGTATGAAGAAGAGGTAGAGGAGGCGACGCAGAGGGCAGGGCTGACCTACTCCAACAACCTGGAGCGAATGCCCTGGCTGGACAAGGGACTCTTCAACATCCTGTTCCTCACCTATGAGGAGATGGTGCAGGTGAGGGGGCTGGGACAGTTGGTGTATCAATGTATACGTgaccTGCGTGGGGCTGTGCAGAAGCTCTGCACGTTCCTTGGCCGGCAGCTGGACAGCACGTCTCTGAACAGGGTGGTGGACAGGGCCACCTTCCGCAACATGAGGGCCGACCCGCGCGCCAACTACGAATTCCTGCCTGCTGACCTGCTGCTGCGAGAGCAGGGCCACTTCCTGCgtaaagGGACCACAGGCGACTGGAAGAACAGCTTCACTGTGGCGCAGAGCGAGAGCTTTGACAGCGTCTTCCAGGAGAGGATGAGGGGCCTGCCGCTGGAGTTCATATGGGACATTAACAAGCAGCCAGAGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94239 lncRNA downstream 4267 42642063 ~ 42646678 (-) False G75467
TU94241 lncRNA downstream 5234 42643753 ~ 42645711 (-) True G75468
TU94240 lncRNA downstream 8512 42641484 ~ 42642433 (-) True G75467
TU94238 lncRNA downstream 10064 42639306 ~ 42640881 (-) True G75466
TU94196 lncRNA downstream 61322 42587012 ~ 42589623 (-) False AMCG00015035
TU94245 lncRNA upstream 48405 42705164 ~ 42705391 (-) True G75472
TU94287 lncRNA upstream 163274 42820033 ~ 42820232 (-) True G75507
AMCG00015034 mRNA downstream 12078 42636026 ~ 42638867 (-) True AMCG00015034
AMCG00015036 mRNA downstream 39338 42597937 ~ 42611607 (-) True AMCG00015036
AMCG00015035 mRNA downstream 61599 42580015 ~ 42589346 (-) False AMCG00015035
AMCG00015029 mRNA downstream 98385 42542587 ~ 42552560 (-) True AMCG00015029
AMCG00015028 mRNA downstream 126204 42523332 ~ 42524741 (-) True AMCG00015028
TU94191 other downstream 116667 42523719 ~ 42534278 (-) False AMCG00015028
TU94183 other downstream 137371 42508869 ~ 42513574 (-) False AMCG00015031
TU94096 other downstream 358650 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 519713 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 1178751 41470294 ~ 41472194 (-) True AMCG00014971
TU94277 other upstream 143392 42800151 ~ 42803287 (-) True G75497

Expression Profile