RNA id: AMCG00015043


Basic Information

Item Value
RNA id AMCG00015043
length 1545
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00015043
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42712359 ~ 42777983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCTTGGAGCACCTGAGGAGTCTGACAGAGGAGCAGCAGCAATGCCTCTTCAGGAGCAAGAAGACTGAAATTGCTGCAATCAGCAACCCCTTCCTTTTGCTTAGCGACCTGAAGGACAACAACGTCATCCCTGAAAAGAAGTGCAAGGAGGTTCAGAGCCTGTCGGGGAAGGAGCAGGTGAAGGGGCTGTACACCCTGCTGTCCTGCCTGGAGAAGAGCCCAGTGAAGATTCTCCTCTTCTGGAAGACCCTGCTAAAGGATCACATTCGCAAGAGCAGCCCTGAGCTCCAGGCCCTGCAGCTGTGCCTGGAGAAGAGCGATGGGTTTGAGGTGCTGGGGGGAAAAGGCAAAGCCAAGAAGTGGAGGAGTAGCATTCAAGTGAAGAACATCCCTCTGGGTCAGCTGTTTCAGGAGCTGACAGAGCAATCTCCCAAACCTACTCATAGCAAAAGAAGGACCAGTCACTCGCACAGCCAGAGAGCAGCGTCCCCGCCGGCAAAGAGAAGAGCCACGAAGAGCCCAGCTGACAAAGGCAGCCCTCAGACCTCCAGTGCCTCAGGTCAGCTTGTGTTCCTGCAGTGCCTCCAGGGCTGCAGTGATGGGCTGGAGCAGGGCAGCTATGTCCCAGCTGCTCAGCTGCTCAGTCCTGTGGGTGAGTGGCTCTGGGTGCAGAGCCTCAGGGCCAGCTGCCTGGGGGAGTCTaacAATGATGATGAGTGTTTGCCCTGTGGCCAGGGTGGGGAGCTGCTGCACTGTGACATGTGTCCACACTCCTTCCACACTGACTGCCACATCCCCCCTGTGAGCAAAGAGCGTCTTGGGTGGATCTGCACCCTGTGTGAGCATAGCAAGATCCAGCGGCCCCTGCATAGATGTCAGTACCTCCTTCTCAGGCTTTACTGTGAGGACAAGAACAACACCTTCATCAACAACCCCAGGCATCTGGAGAGATACTGCAGTGTGATCAGTCGACCCATGTGGCTGGCGCAGATGAGGGAGAATCTGCTGAGGAACAGGTACCAGACTGTGGGTCAGTTTGTGGGGGACGTCAGACTGATCTTTAAAAACTGCACCAAGTACAACAAGATCTATGCTGTGGACCCCAGGTTACAGCGCCAGGACTCCGAAGGAGTGGCTCTTAATGATGTTGTCCTGCGAGATCAGTTCCTGGGAGGCCTTCAAGAAAGCATTATACAACAGGAATTGAAAAGGCAGGTCCACCAGGAGGCGCGACATCTGGAGGAAGACCTGGGATCCCCAAGTAAAGAGGAGGGTCTGTGTTATGCCACTCAACGCTCTGTGCCTTCACCAAGACCATTGGGTgatctggagcagtggaaacggGACATGCGCAAGGTTTTTCAGGGGACTGACTGGTCTAGCAACCCAGAAGAAGAACCCTTGAGACGTACCCTGGGAGAGTGTCGATGTGTGGCCGTTGAGAGACAGAATCATGGGAAATTGGGCCAGGGGAGGCTGGCTAATCGAAATCCAGTAGAGCTCCCTCCCAACAGGGAGAAGACTGTGTGGCATTACTAA

Function

GO: NA

KEGG:

id description
K24504 SP140; nuclear body protein Sp140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94244 lncRNA upstream 6962 42705085 ~ 42705397 (+) True G75471
TU94167 lncRNA upstream 158552 42546004 ~ 42553807 (+) True G75414
TU94009 lncRNA upstream 384745 42326183 ~ 42327614 (+) True G75297
TU94001 lncRNA upstream 392241 42312680 ~ 42320118 (+) False G75293
AMCG00015033 mRNA upstream 63098 42640756 ~ 42649261 (+) True AMCG00015033
AMCG00015032 mRNA upstream 82897 42627206 ~ 42629462 (+) False AMCG00015032
AMCG00015037 mRNA upstream 112704 42589500 ~ 42599655 (+) True AMCG00015037
AMCG00015030 mRNA upstream 236475 42465367 ~ 42475884 (+) True AMCG00015030
AMCG00015018 mRNA upstream 365580 42337369 ~ 42346779 (+) True AMCG00015018
AMCG00015039 mRNA downstream 3885 42781868 ~ 42790274 (+) True AMCG00015039
AMCG00015042 mRNA downstream 21735 42799718 ~ 42810704 (+) True AMCG00015042
AMCG00015038 mRNA downstream 34747 42812730 ~ 42819134 (+) True AMCG00015038
AMCG00015041 mRNA downstream 41668 42819651 ~ 42863983 (+) True AMCG00015041
TU94209 other upstream 82866 42627133 ~ 42629493 (+) True AMCG00015032
TU94031 other upstream 239268 42425454 ~ 42473091 (+) False AMCG00015030
TU94030 other upstream 239268 42468677 ~ 42473091 (+) False AMCG00015030
TU94048 other upstream 246808 42464637 ~ 42465551 (+) False AMCG00015030
TU94007 other upstream 307171 42389869 ~ 42405188 (+) True G75295

Expression Profile