RNA id: TU84458


Basic Information

Item Value
RNA id TU84458
length 499
RNA type TUCP
GC content 0.41
exon number 2
gene id G67623
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 150680 ~ 151523 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCAATCAAATGAGAGTCTAATGTGCTCAGTCCTTTCATCTATAGATTTGTAATCTTCAGTTCAGACAGAACACTTCATTGAGAAGAACAAATAGAGAAGACAAACTCTAACAGAGTACAATGAACATAATCTTATTTCTCCTTTCATTTTGCTCTAAAGCAGGTCTGCTTCTCTGTCAGATGTTTGCTCAGTCCCCTTCCTCTGTGACAGTGGAGCTCGGAGGTTCAGTTACCCTGAGCTGCAGCGTTCCTGAGCGTTATGCAAGCAATGTCTTGGTCTGGATCAAGCAACCATCTGGAGAACCTCCAAAGTCCatagtttcatttaaaaataatgcagcTTCATTTCTTGGAGGCTTTGACAACAAGCACTGTGCAATAGATAGAAGAAGTGATTGTTTTAATCTCAAGATTTCCAACATTGAAGCATCAGACGTTGCCAGATACTACTGTGGAGCAATCAGGGACACAACAGTGAGATTCGGTACTGGAACTTCA

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84469 lncRNA upstream 104529 256052 ~ 320319 (-) True G67632
TU84471 lncRNA upstream 104877 256400 ~ 320620 (-) True G67633
TU84473 lncRNA upstream 118183 269706 ~ 271156 (-) True G67635
TU84477 lncRNA upstream 192891 344414 ~ 346125 (-) True G67638
TU84487 lncRNA upstream 235210 386733 ~ 386941 (-) True G67646
AMCG00014063 mRNA downstream 21160 102032 ~ 129520 (-) True AMCG00014063
AMCG00014064 mRNA downstream 48682 98483 ~ 101998 (-) True AMCG00014064
AMCG00014060 mRNA downstream 105399 7135 ~ 45281 (-) True AMCG00014060
AMCG00014067 mRNA upstream 28486 180009 ~ 183015 (-) True AMCG00014067
AMCG00014070 mRNA upstream 138246 289769 ~ 329417 (-) True AMCG00014070
AMCG00014074 mRNA upstream 363618 515141 ~ 527366 (-) True AMCG00014074
AMCG00014073 mRNA upstream 377640 529163 ~ 529462 (-) True AMCG00014073
AMCG00014075 mRNA upstream 382655 534178 ~ 539460 (-) True AMCG00014075
TU84433 other upstream 17647 169170 ~ 171214 (-) True G67612
TU84527 other upstream 639005 790528 ~ 790957 (-) True G67683
TU84686 other upstream 1650139 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 1655146 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 1688642 1840165 ~ 1842445 (-) True G67825

Expression Profile