RNA id: TU84473


Basic Information

Item Value
RNA id TU84473
length 431
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G67635
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 269706 ~ 271156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcgttttggacatgccgtgtatatgaacatgactgattcaggggcatcagtgatactggcaaaGACAGATCATTCGtcggtttgtgccagtgctgtgaaaacactgtgagtgaaacgccaggtccaaatggcaccgagtgcttttactccactgatcaatacgcaatgctactgcacagtacagagagcaataacgcagcacatccaccaaaataatgattcacggacattatcagcggaggagcatttattgcgttGCTATATATTCATGGAATTAAAGTgtcacctggagaggctgtcaaaatgcagtgtgagggacGAGCTCatgcagggaaagtgctgatactgtcctgtgtgactgtacaAGCTgccaggtatgcaggctaaatatatagtaaatagtttattgaaatacaaagctacagtgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84477 lncRNA upstream 73258 344414 ~ 346125 (-) True G67638
TU84487 lncRNA upstream 115577 386733 ~ 386941 (-) True G67646
TU84499 lncRNA upstream 228851 500007 ~ 501785 (-) True G67658
TU84530 lncRNA upstream 599897 871053 ~ 871627 (-) True G67686
TU84536 lncRNA upstream 826500 1097656 ~ 1097979 (-) True G67691
AMCG00014067 mRNA downstream 86691 180009 ~ 183015 (-) True AMCG00014067
AMCG00014063 mRNA downstream 140186 102032 ~ 129520 (-) True AMCG00014063
AMCG00014064 mRNA downstream 167708 98483 ~ 101998 (-) True AMCG00014064
AMCG00014060 mRNA downstream 224425 7135 ~ 45281 (-) True AMCG00014060
AMCG00014070 mRNA upstream 18613 289769 ~ 329417 (-) True AMCG00014070
AMCG00014074 mRNA upstream 243985 515141 ~ 527366 (-) True AMCG00014074
AMCG00014073 mRNA upstream 258007 529163 ~ 529462 (-) True AMCG00014073
AMCG00014075 mRNA upstream 263022 534178 ~ 539460 (-) True AMCG00014075
AMCG00014072 mRNA upstream 273311 544467 ~ 562632 (-) True AMCG00014072
TU84434 other downstream 98492 61992 ~ 171214 (-) False G67612
TU84527 other upstream 519372 790528 ~ 790957 (-) True G67683
TU84686 other upstream 1530506 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 1535513 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 1569009 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 1588386 1859542 ~ 1863693 (-) True G67824

Expression Profile