RNA id: TU84477


Basic Information

Item Value
RNA id TU84477
length 224
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G67638
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 344414 ~ 346125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaggaggtagttatagtaggagactcaattcttagaggtgtagatcacacagtgtgttctagtgacaaggagacccgcatggtatcttgcctgcctggtgctcaggttgcagatctccctaaactagtagacgggctactggccaaagccggggggaatccactggtcatggtccacattggaaccaatgacataggaaaaggtaggacagaggttctgcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84471 lncRNA downstream 23794 256400 ~ 320620 (-) True G67633
TU84469 lncRNA downstream 24095 256052 ~ 320319 (-) True G67632
TU84487 lncRNA upstream 40608 386733 ~ 386941 (-) True G67646
TU84499 lncRNA upstream 153882 500007 ~ 501785 (-) True G67658
TU84530 lncRNA upstream 524928 871053 ~ 871627 (-) True G67686
TU84536 lncRNA upstream 751531 1097656 ~ 1097979 (-) True G67691
TU84597 lncRNA upstream 1218662 1564787 ~ 1566340 (-) False AMCG00014098
AMCG00014070 mRNA downstream 14997 289769 ~ 329417 (-) True AMCG00014070
AMCG00014067 mRNA downstream 161399 180009 ~ 183015 (-) True AMCG00014067
AMCG00014063 mRNA downstream 214894 102032 ~ 129520 (-) True AMCG00014063
AMCG00014064 mRNA downstream 242416 98483 ~ 101998 (-) True AMCG00014064
AMCG00014060 mRNA downstream 299133 7135 ~ 45281 (-) True AMCG00014060
AMCG00014074 mRNA upstream 169016 515141 ~ 527366 (-) True AMCG00014074
AMCG00014073 mRNA upstream 183038 529163 ~ 529462 (-) True AMCG00014073
AMCG00014075 mRNA upstream 188053 534178 ~ 539460 (-) True AMCG00014075
AMCG00014072 mRNA upstream 198342 544467 ~ 562632 (-) True AMCG00014072
AMCG00014076 mRNA upstream 221804 567929 ~ 577078 (-) True AMCG00014076
TU84434 other downstream 173200 61992 ~ 171214 (-) False G67612
TU84527 other upstream 444403 790528 ~ 790957 (-) True G67683
TU84686 other upstream 1455537 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 1460544 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 1494040 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 1513417 1859542 ~ 1863693 (-) True G67824

Expression Profile