RNA id: TU84499


Basic Information

Item Value
RNA id TU84499
length 1779
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G67658
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 500007 ~ 501785 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAAGCACATTTATATCTGGACACtcctttatttacatttgaaaattacAGTGGACAGCTATTTCATAGATACAATGGGTTCTTGCAGTGCCATTGCTCAGGCAGAACACACTACGTATAAAAACACTAGATCTTTCCTTAGATTAGGGAGTGAAATGAAcccataaataaaaaagaacatgtACAAATATCACAGTCTTTGAACTCTGGCGTTTCATTACATCCCATTAAGCCCCCGGTCAGAAGGGAAAAGACCAGCCTGCTTCCCAAAcggcaaaacaaatattgcattaaATCATAAGGGAAGAAACAGaaccaaacaaaatgtgaatctgGAACAGATACAAGGAAAATTCAAGTGCGCATGCAGATGCTTACATTGTTACTCCTGATTCAGTGTAGTTTGTTTTCAATGATGCAAAGAAATTAGATATTGCagtaatttcatatatataatctgcATGTATTACCAGTTTGTTTGTTACTCTGTCCTTGACCTCTGTCTTGGCTGTTACAGTTCTGTTCTTCCAGTTTTattagaacattttatttagtggACCTGGAGACACTGTGGCATAACAGTGACCTTTTTCAATACAGTCTTGCCAAatgctccacacacacacaaatgcccTAATCTGTTATGAGTCTGAGGAGGAAGGCATGctttttaatataactttaaattgaCTGCATTTCAAGATCATTAACAACAGACACTCTATGCCCTTCTATAAGATGTAGGCAAATATTCCCACTTATGTACAATCCTATTATCTGTGAAGCTAGTAGAAGATTTCCTCATGATATGGTTTGAAGGTCTcgtaaacaatgaaaacaaggcagaaaagaaacaacaggATGATGTTTATCATTTCAGAGACCATGTCAAACTGGAGTACCGGTGCTGTAATGAGAATGTGAAATGAGGGCTCAGGCTCTGCCGTGGCGGAACGAAACAAAGTTACTGAACCTTTCAAACGCCGACCGATTCGCACTGCCCGAGTCAACGTCTGTCTGAAGGAGCAGAAATGCTGCCGTTTACCTGACAGCGACACCGTCTCACAGCATCTGTCTTTCTGGGCAGTTTGTAGGACACTGTCTGTGGGACACACCTTGCTCAGCATTGTGTAAGggcaaaaaacaacacacctcCATCTGCAATGCGATATTGGTAAAGACCATACTGTCCTCGAGTCGAGCGCATGTGCTGAACCTGAGCCGCTGCAAACTGGAACAAAGGGAAGTGCAAACAAAGAAGTTCCAGGGAGAGCCAGGGGAGACAGCAACTCTCCGCTTGGAATAAACGACAAAAGAGCTTCTTGAGGATTGGCAAACCTCGGCACACGTGATACGTATTACAAAGCCTCTTTGATTCAATCAGAAACGATGGCAGGGTTTAGGACAAATACAGGTCTTGTAAAACAACAGGTACTTGATTAAAATGTGATGCTTTGGCCACAGCCTTGAGAGCGGAGCTGAAATACTCCTCACGGTGCCTGAATCAACGGCTGTCCTTTCCGATCATACTGAGGAGAGAGAACAGCCAACCAGCGGTGAGCAAGAGGACGTCTCACTGCAAAACTCTGACTTATCTATGTACACGGCACCATTCTGCATTATTGGCAGAGTTTtctatcttattattattactactattattatatgttatccctattcatattttaatctcaCAGACACTGAATTTCTCTCTGCTGCTGGTGTGTCAAACATACGTGTTATTGTGTCcgagtatttatatatatatatatatatat

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04742 Taste transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84487 lncRNA downstream 113066 386733 ~ 386941 (-) True G67646
TU84477 lncRNA downstream 153882 344414 ~ 346125 (-) True G67638
TU84471 lncRNA downstream 179387 256400 ~ 320620 (-) True G67633
TU84469 lncRNA downstream 179688 256052 ~ 320319 (-) True G67632
TU84530 lncRNA upstream 369268 871053 ~ 871627 (-) True G67686
TU84536 lncRNA upstream 595871 1097656 ~ 1097979 (-) True G67691
TU84597 lncRNA upstream 1063002 1564787 ~ 1566340 (-) False AMCG00014098
TU84693 lncRNA upstream 1318827 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA upstream 1318827 1820612 ~ 1821759 (-) True G67818
AMCG00014070 mRNA downstream 170590 289769 ~ 329417 (-) True AMCG00014070
AMCG00014067 mRNA downstream 316992 180009 ~ 183015 (-) True AMCG00014067
AMCG00014063 mRNA downstream 370487 102032 ~ 129520 (-) True AMCG00014063
AMCG00014064 mRNA downstream 398009 98483 ~ 101998 (-) True AMCG00014064
AMCG00014060 mRNA downstream 454726 7135 ~ 45281 (-) True AMCG00014060
AMCG00014074 mRNA upstream 13356 515141 ~ 527366 (-) True AMCG00014074
AMCG00014073 mRNA upstream 27378 529163 ~ 529462 (-) True AMCG00014073
AMCG00014075 mRNA upstream 32393 534178 ~ 539460 (-) True AMCG00014075
AMCG00014072 mRNA upstream 42682 544467 ~ 562632 (-) True AMCG00014072
AMCG00014076 mRNA upstream 66144 567929 ~ 577078 (-) True AMCG00014076
TU84434 other downstream 328793 61992 ~ 171214 (-) False G67612
TU84527 other upstream 288743 790528 ~ 790957 (-) True G67683
TU84686 other upstream 1299877 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 1304884 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 1338380 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 1357757 1859542 ~ 1863693 (-) True G67824

Expression Profile