RNA id: TU84527


Basic Information

Item Value
RNA id TU84527
length 430
RNA type TUCP
GC content 0.55
exon number 1
gene id G67683
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 790528 ~ 790957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgaggagtggaggaccctgaaggacctttttgattctcccatagagtggtgggagatggtgaagaaaaggaccaagggctacttcattcagctagggAAACGGAAAGCTCGTGAGAGGCGGGCGAGATATTTCCATCTAAACGCCCGCCTCCAGCGCCTGAGtcttttacagctcagaggcttcgacctAGCTGAAGAGGTGGCTCGGGTCAAACTGAGTCTCTCCGCCCTCTATCGGGAGGAGCAAgagaagatcaaggtcctttccagggtccgcatcatggaggacgatgagaaatgcagccgcttcttcttcaagaaaacgaaggagaggcggcctgcaatgtcctccatgatcgactcctcggGGCAAGAGGTGGAGGGCACAGAagctgttgagacagtggtgcgggatttctacagggagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84499 lncRNA downstream 288743 500007 ~ 501785 (-) True G67658
TU84487 lncRNA downstream 403587 386733 ~ 386941 (-) True G67646
TU84477 lncRNA downstream 444403 344414 ~ 346125 (-) True G67638
TU84471 lncRNA downstream 469908 256400 ~ 320620 (-) True G67633
TU84469 lncRNA downstream 470209 256052 ~ 320319 (-) True G67632
TU84530 lncRNA upstream 80096 871053 ~ 871627 (-) True G67686
TU84536 lncRNA upstream 306699 1097656 ~ 1097979 (-) True G67691
TU84597 lncRNA upstream 773830 1564787 ~ 1566340 (-) False AMCG00014098
TU84693 lncRNA upstream 1029655 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA upstream 1029655 1820612 ~ 1821759 (-) True G67818
AMCG00014076 mRNA downstream 213450 567929 ~ 577078 (-) True AMCG00014076
AMCG00014072 mRNA downstream 227896 544467 ~ 562632 (-) True AMCG00014072
AMCG00014075 mRNA downstream 251068 534178 ~ 539460 (-) True AMCG00014075
AMCG00014073 mRNA downstream 261066 529163 ~ 529462 (-) True AMCG00014073
AMCG00014074 mRNA downstream 263162 515141 ~ 527366 (-) True AMCG00014074
AMCG00014081 mRNA upstream 419787 1210744 ~ 1212770 (-) True AMCG00014081
AMCG00014080 mRNA upstream 440667 1231624 ~ 1232601 (-) True AMCG00014080
AMCG00014082 mRNA upstream 476285 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014091 mRNA upstream 600399 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014090 mRNA upstream 662818 1453775 ~ 1454617 (-) True AMCG00014090
TU84434 other downstream 619314 61992 ~ 171214 (-) False G67612
TU84686 other upstream 1010705 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 1015712 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 1049208 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 1068585 1859542 ~ 1863693 (-) True G67824
TU84685 other upstream 1075437 1866394 ~ 1869448 (-) True G67813

Expression Profile